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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcaattgccaattcctttctcgcagttttgttttcttatattcctgtctctgctctacctgtttctgacgtaaaataactttttattgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTGGAACAAATAACTATTGCAAACTTAGGGAATGTTATCAACAGAGGGCAA

Basic information

species Glycine max
transcript GLYMA08G08920.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5057938|gb|AI736414.1|AI736414
EST:     GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAG                         AAATGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: gi|193715157|gb|FK650238.1|FK650238
EST:     CAACTCATGCTGCTGTCGGACCCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: CAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: gi|16341642|gb|BI967237.1|BI967237
EST:     GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: gi|208209884|gb|GE006409.1|GE006409
EST:     TGCTGCTGTCGGACCCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: TGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: gi|208220916|gb|GE018052.1|GE018052
EST:     TGCTGCTGTCGGACCCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: TGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: gi|193441761|gb|FK407726.1|FK407726
EST:     GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: GTAGATGATAACTCAGCAACTCATGCTGCTGTCGGACCCACCCCTGAAAGgttggtcaat ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtctctgctctacctgtttctgacgtaaaataactttttattgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTGGAACAAATAACTATTGCAAACTTAGGGAATGTTATCAACAGAGGGCAA
                                          tattgac  putative branch site (score: 2)
                                     ctttttatt  CT-rich tract
                             taaaataactttttat  TA-rich tract