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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatttactttttctcttattggtatttgtatatttagcaaatgattggttcaacttttgttttaaaaaacctaacacttttcagGTTTGGCTGTTGGGGAATTTGCTATACCTATGGTACATTGTTTTCTGTAAAAGGGTTAACAGACTGTGGAAAAAACTACCGTAATAGTCCTGCCTTGCGT

Basic information

species Glycine max
transcript GLYMA08G03060.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192325188|gb|FK019104.1|FK019104
EST:     TCTAAAGCAATCCGTTACATTGAAAAAACACAAAATCCTGATGGATCATG                         GTTTGGCTGTTGGGGAATTTGCTATACCTATGGTACATTGTTTTCTGTAAA
genomic: TCTAAAGCAATCCGTTACATTGAAAAAACACAAAATCCTGATGGATCATGgtatttactt ... cacttttcagGTTTGGCTGTTGGGGAATTTGCTATACCTATGGTACATTGTTTTCTGTAAA
EST: gi|19052544|gb|BM731211.1|BM731211
EST:     TCCAAAGCAATCCGTTACATTGAAAAAACACAAAATCCTGATGGATCATG                         GTTTGGCTGTTGGGGAATTTGCTATACCTATGGTACATTGTTTTCTGTAAA
genomic: TCTAAAGCAATCCGTTACATTGAAAAAACACAAAATCCTGATGGATCATGgtatttactt ... cacttttcagGTTTGGCTGTTGGGGAATTTGCTATACCTATGGTACATTGTTTTCTGTAAA
EST: gi|192304694|gb|FG998752.1|FG998752
EST:     TCTAAAGCAATCCGTTACATTGAAAAAACACAAAATCCTGATGGATCATG                         GTTTGGCTGTTGGGGAATCTGCTATACCTATGGTACATTGTTTTCTGTAAA
genomic: TCTAAAGCAATCCGTTACATTGAAAAAACACAAAATCCTGATGGATCATGgtatttactt ... cacttttcagGTTTGGCTGTTGGGGAATTTGCTATACCTATGGTACATTGTTTTCTGTAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatttagcaaatgattggttcaacttttgttttaaaaaacctaacacttttcagGTTTGGCTGTTGGGGAATTTGCTATACCTATGGTACATTGTTTTCTGTAAAAGGGTTAACAGACTGTGGAAAAAACTACCGTAATAGTCCTGCCTTGCGT
                                       acctaac  putative branch site (score: 2)
                                             cacttttc  CT-rich tract
                   ttcaacttttgtttta  TA-rich tract