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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggcaatattttgaattacaattttgtttaaactcatctagtttcccagtactgattgctttgtttttcattgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGATTGGTATTATCTTCACATTCTCCTGATGTTTTTCACCCTTACATCAAG

Basic information

species Glycine max
transcript GLYMA07G40230.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208237341|gb|GE035209.1|GE035209
EST:     TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
EST: gi|208234729|gb|GE032372.1|GE032372
EST:     GAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: GAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
EST: gi|193727443|gb|FK663317.1|FK663317
EST:     CACTCATTCCAGGAATTGAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: CACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
EST: gi|208119686|gb|GD920209.1|GD920209
EST:     TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
EST: gi|207703777|gb|GD684423.1|GD684423
EST:     TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAAT                         GACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA
genomic: TTGCAGACCATATTGGGTCACTCATTCCAGGAATTGAAAAAGCATTAAATgtaggcaata ... tgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttaaactcatctagtttcccagtactgattgctttgtttttcattgcttgtcagGACAAATCATCTACCTCAAATTTGAAGATTGAAGCCCTAACATTTACAAGATTGGTATTATCTTCACATTCTCCTGATGTTTTTCACCCTTACATCAAG
                       tactgat  putative branch site (score: 2)
                                ctttgtttttcatt  putative PPT
                                 tttgttttt  TA-rich tract