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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cagttctttacaaataaggattcgctatataagatactattatgtatctgccctaattatctttgatactgatggactacatttcacattgaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAAATTGCTACATTAGTCCAG

Basic information

species Glycine max
transcript GLYMA07G39380.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13788196|gb|BG650788.1|BG650788
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGTGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|254342635|gb|GR858797.1|GR858797
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|254342634|gb|GR858796.1|GR858796
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|298174798|gb|HO017907.1|HO017907
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|193337046|gb|FK302426.1|FK302426
EST:     CAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTTGAGGGATGAGTGGGCCCTAAAA
genomic: CAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCC-TTGAGGGATGAGTGGGCCCTAAAA
EST: gi|151402902|gb|EV272715.1|EV272715
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTACCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|254318250|gb|GR832418.1|GR832418
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|193687626|gb|FK633471.1|FK633471
EST:     GTGGAGCTTGAAG                         GGGCACCCTTCAAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAA
genomic: GTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTC-AAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAA
EST: gi|58023377|gb|CX710118.1|CX710118
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|254332946|gb|GR850196.1|GR850196
EST:     ACATGGTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: ACATGGTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|151413068|gb|EV282876.1|EV282876
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
EST: gi|18712744|gb|BM522681.1|BM522681
EST:     GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAG                         GGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA
genomic: GTAAATTCAAGCCTGTGATCAAGAAGGCAATGGTGGAGCTTGAAGgtatatatat ... gaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctgccctaattatctttgatactgatggactacatttcacattgaatcttcagGGGCACCCTTCAAAAAGTTTGCCTCCTTGAGGGATGAGTGGGCCCTAAAAAATTGCTACATTAGTCCAG
                     tactgat  putative branch site (score: 2)
                                                tcttc  putative PPT
        taattatctttgata  TA-rich tract