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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttgttcgatgttttttttgtcttgcctttctcttattatgacatattatgcttacatttttacattattttgtagAAAACTAAAAAGCAGAATGCTACAACTGGGTTGCGGACTTGCAATAACATTTTGACAATGACAAAG

Basic information

species Glycine max
transcript GLYMA07G32480.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16343431|gb|BI969026.1|BI969026
EST:     NNAACAAATCTATGGCAGGTGCTAAAACTGATGAAGAAAAGGAAAAAATT                         NNNACTAAAAAGCAGAATGCTACAACTGGGTTGCGGACTTGCAATAACATT
genomic: ACAACAAATCTATGGCAGGTGCTAAAACTGATGAAGAAAAGGAAAAAATTgtgagttctt ... tattttgtagAAAACTAAAAAGCAGAATGCTACAACTGGGTTGCGGACTTGCAATAACATT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttgcctttctcttattatgacatattatgcttacatttttacattattttgtagAAAACTAAAAAGCAGAATGCTACAACTGGGTTGCGGACTTGCAATAACATTTTGACAATGACAAAG
                            tgcttac  putative branch site (score: 2)
                                            ttatttt  putative PPT
                      atattatgcttacatt  TA-rich tract