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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacatattgaccttaaatttagcttctaagcataacaaaatggagaagtggccaaatgagcaatgccctatgacaatgacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCAACTAGCCACTGATCTTTGATGTGCAAAAGTTGCCAAAGGGGCATTAAAT

Basic information

species Glycine max
transcript GLYMA07G18470.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G18470.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv08s0105g00590.t01 (Vitis vinifera), 3'ss of exon 14
gtacatattgaccttaaatttagcttctaagcataacaaaatgga-gaagtggccaaatgagcaatgccctatgacaatgacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCAACTAGCCACTGATCTTTGATGTGCAAAAGTTGCCAAAGGGGCATTAAAT
                        |  ||| || |||    |    | ||| |  |  |||    |||| |   |  |   ||||| ||   | |  || |  ||||| |   |    | ||||    ||||||||| |||||||||||| | ||||||||| | ||||| || ||||| ||||||||||| ||||    |  |     |   |    |    | |   |||
------------------------tcataatcagaaccccgttcctggagttg--atctgaatt-tgccattcaattaatccatctgtt---attggatga--ctaaagtttgtctttaatcgttaccgcagGCTAGCGCACAGCCATTTCTTGTGCTTGGTCTTTTGGTGACGGCTCTGGCAACTAGCCATTGATTCACGTGGCAACTACCATATGGAGCAAGGAGAGAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15589810|gb|BI674426.1|BI674426
EST:     TTCAAGTATTTCCTCCAGGACCCTGTGAAATATGATGTTAAATATCAG                         GCTAGTGCACAGCCATTTTTGGTGCTTGGTCTGTTGGTTACTGCTCTAGCA
genomic: TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtacatattg ... gtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCA
EST: gi|192328988|gb|FK021399.1|FK021399
EST:     TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAG                         GCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCA
genomic: TTCAAGTATTTCCTCAAGGACCCTGTGAAATATGATGTTAAATATCAGgtacatattg ... gtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgacatctttttagagtaaattattctaaactaattgaacactcgtgtttgcagGCTAGTGCACAGCCATTTTTGGTGCTTGGTTTGTTGGTTACTGCTCTAGCAACTAGCCACTGATCTTTGATGTGCAAAAGTTGCCAAAGGGGCATTAAAT
                             aactaat  putative branch site (score: 2)
        tttttagagtaaatta  TA-rich tract