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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctttctttcttggtttaattaattacttttaataatttatcattttgttatttatatataacagtttaccattttgttatttccagATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGACGTGAGAAG

Basic information

species Glycine max
transcript GLYMA07G08030.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16104878|gb|BI892618.1|BI892618
EST:     ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAG                         ATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
genomic: ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAGgtgagttctt ... ttatttccagATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
EST: gi|10235459|gb|BE804347.1|BE804347
EST:     ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAG                         ATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
genomic: ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAGgtgagttctt ... ttatttccagATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
EST: gi|13125620|gb|BG316190.1|BG316190
EST:     TGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAG                         ATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
genomic: TGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAGgtgagttctt ... ttatttccagATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
EST: gi|22540098|gb|BU089941.1|BU089941
EST:     ATGATCTGCAAATTCACATCATAATTTGTGGATCTGGGCGAGATGGGCAG                         ATCATTGCACAACTTCTTTCTGAGCAACCTATTCCCTTTGTTGCACTATAC
genomic: ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAGgtgagttctt ... ttatttccagATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
EST: gi|20498319|gb|BQ273249.1|BQ273249
EST:     ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAG                         ATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
genomic: ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAGgtgagttctt ... ttatttccagATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
EST: gi|8669480|gb|BE190587.1|BE190587
EST:     ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAG                         ATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC
genomic: ATGATCTGCAAAATCACATCATAATTTGTGGATTTGGGCGAGTTGGGCAGgtgagttctt ... ttatttccagATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataatttatcattttgttatttatatataacagtttaccattttgttatttccagATCATTGCACAACTTCTTTCTGAGCAACTTATTCCCTTTGTTGCACTAGACGTGAGAAG
                        atataac  putative branch site (score: 3)
                                             ttatttcc  putative PPT
                ttatttatatataaca  TA-rich tract