1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...tgggctaccagcccaaggactgacatagtagacatttaggtacagcatgacaaaatctggtccttttgctgcaaaccttattctggaatcataaatgcagGCACCTTTTTGTCATTGGGAAAAAAGAGAGGGGAGCTCAAGATTTTATGGACAAGAGGGGAACCAGAAAGGCATTGTCCTCATATCCAAGAGGATAACCA
species | Glycine max |
transcript | GLYMA07G07610.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGATGGGCATGGTCAGCCAGCTTTGCTTTATATAGTCCCATTTACACTAG GCACCTTTTTGTCATTGGGAAAAAAGAGAGGGGAGCTCAAGATTTTATGGAEST: gi|27445826|gb|CA952949.1|CA952949
genomic: GGATGGGCATGGTCAGCCAGCTTTGCTTTATATAGTCCCATTTACACTAGgtaagtataa ... ataaatgcagGCACCTTTTTGTCATTGGGAAAAAAGAGAGGGGAGCTCAAGATTTTATGGA
EST: GGATGGGCATGGTCAGCCAGCTTTGCTTTATATAGTCCCATTTACACTAG GCACCTTTTTGTCATTGGGAAAAAAGAGAGGGGAGCTCAAGATTTTATGGA
genomic: GGATGGGCATGGTCAGCCAGCTTTGCTTTATATAGTCCCATTTACACTAGgtaagtataa ... ataaatgcagGCACCTTTTTGTCATTGGGAAAAAAGAGAGGGGAGCTCAAGATTTTATGGA
catgacaaaatctggtccttttgctgcaaaccttattctggaatcataaatgcagGCACCTTTTTGTCATTGGGAAAAAAGAGAGGGGAGCTCAAGATTTTATGGACAAGAGGGGAACCAGAAAGGCATTGTCCTCATATCCAAGAGGATAACCA
aatcataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgggctaccagcccaaggactgacatagtagacatttaggtacagcatgacaaaatctggtccttttgctgcaaaccttattctggaatcataaatgcagGCACCTTTTTGTCATTGGGAAAAAAGAGAGGGGAGCTCAAGATTTTATGGACAAGAGGGGAACCAGAAAGGCATTGTCCTCATATCCAAGAGGATAACCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - -ccagccc
- - - - - - - - - actgaca
- - - - - - - - - - - - - - - - - - - - - - gcatgac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaaacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attctgg