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gtgaaagattgatatacctttaagtaacataacagttttacttttacatgtacacactttcaaacataaatgggcacatgcctgattgttaaaacgttccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTCCACGATATCGATGCCCTGGCTAAAATGGTTGATCCTACATTGGAAGGA
species | Glycine max |
transcript | GLYMA07G05230.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGAAACCATTTGATAG CTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTEST: gi|208078027|gb|GD875321.1|GD875321
genomic: GGAAACCATTTGATAGgtgaaagatt ... ccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACT
EST: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAG CTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTEST: gi|7029604|gb|AW459321.1|AW459321
genomic: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGgtgaaagatt ... ccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACT
EST: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAG CTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTEST: gi|208211697|gb|GE009944.1|GE009944
genomic: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGgtgaaagatt ... ccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACT
EST: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAG CTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTEST: gi|298175534|gb|HO018245.1|HO018245
genomic: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGgtgaaagatt ... ccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACT
EST: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAG CTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTEST: gi|151400859|gb|EV270673.1|EV270673
genomic: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGgtgaaagatt ... ccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACT
EST: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAG CTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACT
genomic: TTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGgtgaaagatt ... ccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACT
acactttcaaacataaatgggcacatgcctgattgttaaaacgttccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTCCACGATATCGATGCCCTGGCTAAAATGGTTGATCCTACATTGGAAGGA
gcctgat putative branch site (score: 4)
cgttccttcttc putative PPT
aaacataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaaagattgatatacctttaagtaacataacagttttacttttacatgtacacactttcaaacataaatgggcacatgcctgattgttaaaacgttccttcttcagCTCAAGGCCGAGGTCTGAGCAGGCTTTGGTTCGATGGGCAACACCTCAACTCCACGATATCGATGCCCTGGCTAAAATGGTTGATCCTACATTGGAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG