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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaacaatttttaatgtagtattgccatcaaatttgtgaatcattttaattgtaacattttttattttgtttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGG

Basic information

species Glycine max
transcript GLYMA07G03930.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03930.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv09s0002g01800.t01 (Vitis vinifera), 3'ss of exon 15
gtaagtcaacaatttttaatgt-agtattgccatcaaatttgtgaatcattt-taattgtaacattttttattttgtttttg-tgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGG
|||||| |   || ||  |||| |  ||||| ||  ||||     ||||  |  | |  ||||||||||  |||||    |  | ||||||  | ||||||||||| ||||||||||||||||| ||||| || |||||||| || ||||||| |
gtaagtaatagatcttagatgttaacattgctatttaattaccatatcacatacactcttaacatttttctttttgggactaatccagGTACCACAATGTGAATATCAATGTTGCTGTGCAGACGGATAATGGACTCTTTGTCCCCGTCATCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192309363|gb|FK000571.1|FK000571
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaac ... ttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
EST: gi|298166277|gb|HO009248.1|HO009248
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaac ... ttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
EST: gi|192309362|gb|FK000570.1|FK000570
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaac ... ttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
EST: gi|8827585|gb|BE211315.1|BE211315
EST:     CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCA                         GTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT
genomic: CGTAAAGTTCCTCAATGTAACAGTTCATGGGCAAATGATTATATTCGCCAgtaagtcaac ... ttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catcaaatttgtgaatcattttaattgtaacattttttattttgtttttgtgcagGTATAATAATGTGAATATTAATGTTGCTGTGCAGACTGATAACGGGCTCTTTGTTCCAGTCATCAGG
                        ttgtaac  putative branch site (score: 2)
                                ttttttattttgtttt  CT-rich tract
     aatttgtgaatcattt  TA-rich tract