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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaattttcttaccaaaacaatttttcttatccgtggttggaccatataaatttcatttttaagactagtgtatcatgacagGGTATGATTTTACTCTGGGATGTTGACTCGGGACTTGCTCAAATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAG

Basic information

species Glycine max
transcript GLYMA06G44340.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 3'ss of exon 14
-------gtatgaattttcttaccaaaacaatttttc---ttatccgtggttggaccatataa-------atttcatttttaagactagtgtatca---tgacagGGTATGATTTTACTCTGGGATGTTGACTCGGGACTTGCTCAAATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAG
         ||   | ||  ||    |  || | | |     ||       ||     | |||       |    | |   || | || ||| |||   |  ||||| |||||| |  | ||||||  ||| || |||||||||||  ||||||||||||| ||||||||||||  ||||||  ||||||| || || || ||  
gtaagttacattgttattgatatttgacaaactctacaaaccattgacaactgagttctttaactggtcaacaataataacaaaagtactgtttcaccttttcagGGAATGATTCTCTTGTGGGATACTGATTCTGGACTTGCTCAGCTTGACAAGTACTTACATAGTAATGATGCTCATGTTGTTGCTGGAGCTTTGCTAGGTA

upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G155384_T03 (Zea mays), 3'ss of exon 14
-----------gtatga-attttcttaccaaaacaatttttcttatccgtggttggaccatataaatttcatttttaagactagtgtatcatgacagGGTATGATTTTACTCTGGGATGTTGACTCGGGACTTGCTCAAATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAG
           ||||   || || ||   |   |||| | | |  |   || | | || ||  ||   |  ||  | |   |  | | |  |  ||||| |||||| |  | ||||||  ||| || || || |||||  ||||||||||||| ||||||||||||| ||||||  ||||||| || || || ||  
gtataattatagtattctatatttttcttactgcaatatatatggttt-tgttagaactatccaatagttgttaatgattattttttttgcttccagGGAATGATTCTCTTGTGGGATACTGATTCCGGGCTCGCTCAGCTTGACAAGTACTTGCATAGTAATGATACTCATGTTGTTGCTGGAGCTTTGCTAGGTA

upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 14
lower sequence: AT2G20580.1 (Arabidopsis thaliana), 3'ss of exon 12
gtatgaattttcttaccaaaacaatttttcttatccgtggttggaccatataaatttcatttttaag-----------actagtgtatcatgacagGGTATGATTTTACTCTGGGATGTTGACTCGGGACTTGCTCAAATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAG
||||   ||||||||    |  ||||| | |   | ||| |  || |||  || |   | || |||              |    |||||| | |||||||||||  ||| |||||||| ||||| |||||| | ||| | ||||| || ||||||||||||||||||| | |||||||||| ||| | |||||||
gtatactttttcttatttgatgaatttattta--ctgtgctcagatcatggaagtaagaattgtaaccagatctttttgtttccctatcat-atagGGTATGATTCAACTGTGGGATGTGGACTCTGGACTTTCCCAACTCGACAAATATTTCCATAGTAATGATAATCCTATCATTGCTGGAGCACTGCTGGGAG

upper sequence: GLYMA06G44340.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv12s0028g03130.t01 (Vitis vinifera), 3'ss of exon 14
------------------------gtatgaattttcttaccaaaacaatttttcttat-ccgtggttggaccatataaattt-catttttaagactagtgtatcatg--acagGGTATGATTTTACTCTGGGATGTTGACTCGGGACTTGCTCAAATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAG
                         ||||| |    ||        |  ||||   ||  |||  |  |     ||  |||| ||   || | | |  |||    ||    |||| |||||  |  | |||||||||||||| ||||||||||||||||||||||| || || || ||||| || |||||||||||||||||| || | || |
gtatttgttcttttgctactatgactatgagtccatttcatttgctagatttttgcatgtcgtcttctgctgtcattgatttgcaggcttcacattgttgttctttgttgtagGGCATGATCCTGTTATGGGATGTTGACTCTGGACTTGCTCAAATTGACAAGTATTTTCACAGCAATGACAACCATGTCATTGCTGGTGCACTATTAGGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatccgtggttggaccatataaatttcatttttaagactagtgtatcatgacagGGTATGATTTTACTCTGGGATGTTGACTCGGGACTTGCTCAAATTGACAAGTACTTCCATAGTAATGATAATCATGTCATTGCTGGTGCATTACTGGGAG
                 atataaatttcatttt  TA-rich tract