Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttgcattaatcatcaagtatgatgaaaatcccatgaactaggttgaacttcattttaaacttgaacatgctttgataaagtgaatcctcaatttagcagGATGAATTTTCTGGGAATGGATCAGGAACTGTTGTTATTCGGTCTCCAAAAGGACCCCAGCCATCACTGTTTCGTGACCAAAGTTCCCGG

Basic information

species Glycine max
transcript GLYMA06G36130.3
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G36130.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv19s0014g02310.t01 (Vitis vinifera), 3'ss of exon 14
gttgcattaatcatcaagtatgatgaaaatcccatgaactaggttgaactt-----cattttaaacttgaacatgctttgataaagtgaa-tcctcaatttagcagGATGAATTTTCTGGGAATGGATCAGGAACTGTTGTTATTCGGTCTCCAAAAGGACCCCAGCCATCA---CTGTTTCGTGACCAAAGTTCCCGG
      || ||||  |  |||  |    | |   | ||    || | |  |     | |  |   |||| |  |  ||    |   |||| | ||  ||||| ||||| ||||| |||| || ||||||||||||||||||| | || ||||||| ||||   ||| ||||    |  ||| |||| ||||||   | |
-----ttttatcaagagatatttttttgaacttttaaagacagtggcatatatggacttcatgtgcttgtatctatttctgaagtttgaagtgcttgattta-cagGACGAATTGTCTGTGAGTGGATCAGGAACTGTTGTTGTACGATCTCCAAGAGGATATCAGTCATCTATTCCTTTTAGTGATCAAAGTAGTCTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacttcattttaaacttgaacatgctttgataaagtgaatcctcaatttagcagGATGAATTTTCTGGGAATGGATCAGGAACTGTTGTTATTCGGTCTCCAAAAGGACCCCAGCCATCACTGTTTCGTGACCAAAGTTCCCGG
                         ctttgat  putative branch site (score: 5)
       attttaaacttgaa  TA-rich tract