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gtatgagatttatgatttctaaaataactaaaattttgcttcaatatattcagtctaactaaattttgtatgagcagAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAA
species | Glycine max |
transcript | GLYMA06G15350.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TCAGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAA AACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGEST: gi|208221212|gb|GE019538.1|GE019538
genomic: TCAGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAAgtatgagatt ... gtatgagcagAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCG
EST: AGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAA AACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGEST: gi|208192373|gb|GD993749.1|GD993749
genomic: AGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAAgtatgagatt ... gtatgagcagAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCG
EST: TCAGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAA AACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGEST: gi|207810107|gb|GD780881.1|GD780881
genomic: TCAGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAAgtatgagatt ... gtatgagcagAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCG
EST: TCAGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAA AACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGACTGATC
genomic: TCAGTTCAGAAAATTCCAGAAATACCTGCTGACCTGAAGAATATATACAAgtatgagatt ... gtatgagcagAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTG-CTGATC
aataactaaaattttgcttcaatatattcagtctaactaaattttgtatgagcagAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAA
aactaaa putative branch site (score: 2)
taaaattttgcttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgagatttatgatttctaaaataactaaaattttgcttcaatatattcagtctaactaaattttgtatgagcagAACTGTTTGGGAGATTAAACAAAGGACATTGGTAGATATGGCTGCTGATCGAGGATGCTACATAGATCAGAGCCAAAGCTTAAATATTCACATGGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA