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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...acaatggttagtccaatcatgaatggcatagttcaggtggtgataattattataagcatctgcttgttcttaattcttgctttatctttgatttacccagGAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTG

Basic information

species Glycine max
transcript GLYMA06G10180.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10180.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv18s0001g07630.t01 (Vitis vinifera), 3'ss of exon 14
acaatggttagtccaatcatgaatggcatagttcaggtggtgataattattataagcatctgcttgttcttaattcttgctttatctttgatttacccagGAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTG
                |  || || || |  |     | ||||   ||||  | |||||  |   ||    || | |    | |   ||  |||  |||||||||||| ||||||||||||| |||||||||||  || |||||  |||| |||||||||||| ||||||| ||  ||
---------------gttttggattgctt--tctgatttgtga-ggttatc-ttagcataagagagt----aaatataaaatgagagttactttgtccagGAAAGATTGGCCCTCAAAGAGGATGGTGTTCAACTTGGTCCTGCTCTACTATTCTTTGGATGTCGGAATCGCCGGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729064|gb|BU762615.1|BU762615
EST:     TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAG                         GAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTC
genomic: TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaat ... atttacccagGAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTC
EST: gi|14011836|gb|BG726758.1|BG726758
EST:     TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAG                         GAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTC
genomic: TTATGGTTGGACCTGGTACTGGTCTTGCACCTTTCAGGGGATTTTTACAGgtatgtgaat ... atttacccagGAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attattataagcatctgcttgttcttaattcttgctttatctttgatttacccagGAAAGATTTGCCCTCAAAGAGGCTGGTGTTCAACAAGGCCCTGCAATACTCTTCTTTGGATGTAGGAATCGTCGATTG
                                              tttaccc  CT-rich tract
                                   tttatctttgattta  TA-rich tract