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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcttcctgttctcattcctgactatggctatttggttccattattgaaggttgattactagaatattaaaagaggacattaattttgctgttgttttcttgaagGTACTGCAAATATTGACACAAGACACGACGCCATCTTCTGATTTGATATCTACCGTTAAACGTTTGTATGAAACTAAATTTAAG

Basic information

species Glycine max
transcript GLYMA06G09580.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18730404|gb|BM525857.1|BM525857
EST:     TCCGTATCATATCTGATCCACCACAAGGAAGTGAAAATCTTCTGACATTG                         GTACTGCAAATATTGACACAAGACACGACGCCATCTTCTGATTTGATATCT
genomic: TCCGTATCATATCTGATCCACCACAAGGAAGTGAAAATCTTCTGACATTGgtagcttcct ... tttcttgaagGTACTGCAAATATTGACACAAGACACGACGCCATCTTCTGATTTGATATCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttgattactagaatattaaaagaggacattaattttgctgttgttttcttgaagGTACTGCAAATATTGACACAAGACACGACGCCATCTTCTGATTTGATATCTACCGTTAAACGTTTGTATGAAACTAAATTTAAG
                           cattaat  putative branch site (score: 3)
 ttgttttctt  putative PPT
 ttactagaatattaaa  TA-rich tract