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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG

Basic information

species Glycine max
transcript GLYMA06G09190.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os01g10150.1 (Oryza sativa), 3'ss of exon 14
----------------------------------gtcttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
                                  |  ||  |||| |  |   |  |   | | | ||||  |     |   |||| ||      ||||| | |  |||| |  | ||   |   |||| || |||||||||||||| ||||| |||||||| || |||| | | ||||||| |||||||||||| ||  |||| || || ||||| || || |  |
gtacgtttggagtgtccaagagccttgtaaaattgaatt-cattttagcagcaagctac-actgactatcaattgaatatgtaaaagtcttga--gattt-tattatctcgcatatctcttttgtagGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATGTGACCAGGTGG

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os01g10150.2 (Oryza sativa), 3'ss of exon 14
----------------------------------gtcttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG----
                                  |  ||  |||| |  |   |  |   | | | ||||  |     |   |||| ||      ||||| | |  |||| |  | ||   |   |||| || |||||||||||||| ||||| |||||||| || |||| | | ||||||| |||||||||||| ||  |||| || || ||||| || || |  |    
gtacgtttggagtgtccaagagccttgtaaaattgaatt-cattttagcagcaagctac-actgactatcaattgaatatgtaaaagtcttga--gattt-tattatctcgcatatctcttttgtaggtagTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATGTGACCAGGTGGCTTT

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G116151_T03 (Zea mays), 3'ss of exon 14
-------------------------------------------------------------------gtcttgtatttaaaaaattaattgtgattaa-atatccttgtgg--------cactgaaaa--atcccatctgatttatgtattctctccaa---acttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
                                                                   | | ||  || | |    | | | | |  || ||| | |   |           |||||||        |   | ||   | || | |  ||     ||  |   |||||||||| ||||| ||||||||||| ||||| ||||| |||||| | ||||||||||| | |||||||||  | ||||| || ||||||||||| || |
gtacgttgacgtgctcagaaggctggcctttgctttgaatcgtctactatccaggaaaaaacatatcgacatgccttgatattgctgactctcaagaacatagcttcaagaaaaacatatgctgaaaacagcattgttaaacttggttcttatttttaatgtttttggttttagGTTGTGGAGCTTGACTTCTTGTATCCAAGTGAGGGTATCCATCGACGATGGGATAATGGATTTCGCATCACGGCTACTGCAGCTACATGGGATCAGGCAG

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G095634_T01 (Zea mays), 3'ss of exon 7
--gtcttgtatttaaaaaattaattgtgattaaatatc----cttgtggc---actgaaaaatcccatctgatttatgtattctctccaaacttaatg-ccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
  ||| |  |  |  |  || |  | ||     |  ||    || || ||   |||  |||| | | | |   |||| |   || |    | ||| |  |||||| || ||||| ||||||||||||||||| || || ||||||  ||||||||| |  |||||  | || ||| || || |||| || || ||||| ||||
gagtcgttcagatcgactatcacctctgcaccgacttctcgactagtcgcccgactttaaaacctcgttt--cttat-tgaactattggcatttactttccagGTGGTTGAACTGGATTTCTTGTATCCCAGCGAGGGAATTCATAAAAGGTGGGACAGGGGTTACTGGATAACCGCAGCTCCTGCTACTTGTGATCAGGCTG

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv09s0002g03680.t01 (Vitis vinifera), 3'ss of exon 14
gtcttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
   || | |  |    | ||  |     ||| |     | |||| |  ||    ||  | |  || |   ||||| |  |   |||||  |||||||| || || |||||  | || || || ||||||||||||||| |||||||||||||||  || || ||  ||||||| ||||| |||||||| ||||
--gttatctggattttactatgttctcctaatttgttatatggctcctaag---cctttattcttcactgattctgttga---ttaatttcagGTTGTTGAGCTGGATTTTCTTTACCCTAGCGAAGGTATTCATCGACGGTGGGATAATGGTTTCCGTATTACAGCAACTGCAGCAACTTGGGATCAGGCTG

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S131_16V6.1 (Physcomitrella patens), 3'ss of exon 14
-------------------------------------------------------------------------gtcttgtatttaaaaa-attaattg--tgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgcc------agGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
                                                                          |   |||  | |||| |||   ||    ||| |  || | |||        |  | |  ||   |||  | | |  |  | ||  |   ||||      |||| || || ||||||||||||||||||||||||||||||||| || | ||||| | ||| || ||||| ||||| |||||||| || |||||||| || |
gtaattagcgctctaagcctacttgatttacgaaaaccgcatactatttttgcttcttcgactcggagcagatatgaagtaaatgaaaatatttgctgaccaatttagaattcctgtcatcggacatcacctgattacattcctctctcttaccgaatgtatttgccctctgcagGTCGTTGAGCTTGATTTCTTGTATCCCAGTGAAGGTATTCATAGACGATGGGACAGTGGATACCGCATAACCTCTACTGCTGCGACTTGGGATCAGGCAG

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: PP1S66_174V6.1 (Physcomitrella patens), 3'ss of exon 14
--------------------------------------------------------------------------------------------gtcttgtatttaaaaaattaattgtgattaaatatccttgtggcactg-------aaaaatcccatctgatttatgtattctctccaaacttaatgcc---agGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
                                                                                            |      || |  |  | |  ||||||   || | | | |  |    |        |  || | || || ||     | |    |     ||     |   |||| || || ||||| ||||||||||| || |||||||||||  |  | ||||| | ||| ||||||||||| || |||||||| |||||||||||||| |
gtgattaaaaccgtcgatcggtttttttattaaactttcatttatttttatcagctttatgattttagcatgatccaaagtgtacatcaattgagagacatatcgaggact--ttgtgacctaacaccttagaagtgacgtgtttttgattatgctatttgtttctcacaatgctgctttcttttgcctctgcagGTGGTTGAGCTTGACTTCTTGTATCCTAGCGAAGGTATTCACAGGCGATGGGACAGTGGATATCGCATCACATCTACTGCTGCCACATGGGATCAAGCAG

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ38433 (Selaginella moellendorffii), 3'ss of exon 12
gtcttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgc-cagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
                                      |||    |        |    |  | || | |     | | | |   | | | ||||| ||||| || |||||| | |||||||| ||||| || || ||  ||||||||  ||| |||||||||||| | ||||| ||||| ||||||||||| |
-----------------------------------gtctgttaatccattcgggcttcgcacacttgtttgacagcgctatatgcattacacagGTAGTGGAGCTGGATTTCCTCTATCCCAGCGAAGGCATCCACCGGCGGTGGGATTGTGGATATCGCATCACCGCCACTGCGGCAACTTGGGATCAAGCAG

upper sequence: GLYMA06G09190.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ31718 (Selaginella moellendorffii), 3'ss of exon 12
gtcttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
                                      |||    |        |    |  | || | |     | | |  | | |  | |||| ||||| || |||||| | |||||||| ||||| || || ||  ||||||||  ||| |||||||||||| | ||||| ||||| ||||||||||| |
-----------------------------------gtctgttaatccattcgggcttcgcacacttgtttgacagcgctatgcatgacac-agGTAGTGGAGCTGGATTTCCTCTATCCCAGCGAAGGCATCCACCGGCGGTGGGATTGTGGATATCGCATCACCGCCACTGCGGCAACTTGGGATCAAGCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193532847|gb|FK493269.1|FK493269
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTA
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTA
EST: gi|208322512|gb|GE121741.1|GE121741
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTACTTGTAATCCCAGTGAAGGTATTCATCGAAGGT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTT-CTTGTA-TCCCAGTGAAGGTATTCATCGAAGGT
EST: gi|15337521|gb|BI498177.1|BI498177
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193722258|gb|FK656206.1|FK656206
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|207834430|gb|GD806331.1|GD806331
EST:     ATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: ATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193493200|gb|FK463030.1|FK463030
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGNTTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193401851|gb|FK369310.1|FK369310
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCA
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCA
EST: gi|207685534|gb|GD670308.1|GD670308
EST:     TCTCGGTGGGGCTTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: TCTC-GTGGGGC-TGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|207787129|gb|GD756274.1|GD756274
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGT-G
EST: gi|207790752|gb|GD761889.1|GD761889
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193489088|gb|FK457093.1|FK457093
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|208125259|gb|GD921031.1|GD921031
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCAT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCAT
EST: gi|208149484|gb|GD948930.1|GD948930
EST:     CTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCTAGATCAG                         GTTGTGGAACTTGATTTCTTGTAT
genomic: CTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTC-AGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTAT
EST: gi|207728834|gb|GD708256.1|GD708256
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGAGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193344193|gb|FK313605.1|FK313605
EST:     TGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: TGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|208236834|gb|GE029298.1|GE029298
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTT
EST: gi|193377059|gb|FK342696.1|FK342696
EST:     CTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGAATCAG                         GTTGTGGAACTTGATTTCTTGTATC
genomic: CTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGA-TCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATC
EST: gi|193466424|gb|FK431649.1|FK431649
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|208044757|gb|GD841909.1|GD841909
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATT-CTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|51343674|gb|CO984407.1|CO984407
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193426281|gb|FK389056.1|FK389056
EST:     GCTCTAGATGGGCAATTGTCATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|208091185|gb|GD890938.1|GD890938
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193728992|gb|FK665646.1|FK665646
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTA
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTA
EST: gi|193471474|gb|FK436575.1|FK436575
EST:     GTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGT-G
EST: gi|208222336|gb|GE020774.1|GE020774
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTAT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTAT
EST: gi|207837070|gb|GD808379.1|GD808379
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTAT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTAT
EST: gi|193527137|gb|FK484593.1|FK484593
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGT
EST: gi|193526486|gb|FK483788.1|FK483788
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTA
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTA
EST: gi|207702142|gb|GD682015.1|GD682015
EST:     GCTCTAGACGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193647519|gb|FK589652.1|FK589652
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGNGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTA
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTA
EST: gi|207790564|gb|GD760917.1|GD760917
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCC
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCC
EST: gi|193359213|gb|FK326272.1|FK326272
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATCCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|208037353|gb|GD836192.1|GD836192
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
EST: gi|193385480|gb|FK349848.1|FK349848
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGG-CTGGTTTTTCAGATCAG                         GTTGTGGAACTTGAT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGAT
EST: gi|208304520|gb|GE104825.1|GE104825
EST:     TTGTTATGTCTCGTGGGGCTTGGTTTTTCAGATCAG                         GTTGTGGAACTTGTATTTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGT
genomic: TTGTTATGTCTCGTGGGGC-TGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTG-A-TTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGT
EST: gi|193515753|gb|FK473343.1|FK473343
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCAT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCAT
EST: gi|208060662|gb|GD856640.1|GD856640
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTG
EST: gi|208168174|gb|GD966498.1|GD966498
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTT
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTT
EST: gi|193499597|gb|FK458382.1|FK458382
EST:     GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAG                         GTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGG
genomic: GCTCTAGATGGGCAATTGTTATGTCTCGTGGGGCTGGTTTTTCAGATCAGgtcttgtatt ... ttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGT-G


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG
                                           acttaat  putative branch site (score: 4)
                        atttatgtatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcttgtatttaaaaaattaattgtgattaaatatccttgtggcactgaaaaatcccatctgatttatgtattctctccaaacttaatgccagGTTGTGGAACTTGATTTCTTGTATCCCAGTGAAGGTATTCATCGAAGGTGGGATAATGGTTATCGCATCACCTCAACTGCTGCAACATGGGATCAAGCTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG