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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttttgttttttttcttgcctcataatatttgctttttaaagttatattactgtatcttattttatttgtatcttttttaattcttatcatgaattttttcattggagatttttaatgccattttagttctgtcattgtgttcaataatgttagcggcatgattatatttgaaaacctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATATCGAGCTCGACGATATAGCCGAAGTAGGAGCCCAGTTCGTAGTAGGAGT

Basic information

species Glycine max
transcript GLYMA06G07380.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16996005|gb|BM085377.1|BM085377
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG                         GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
EST: gi|192321089|gb|FK013549.1|FK013549
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG                         GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
EST: gi|7691963|gb|AW760080.1|AW760080
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG                         GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
EST: gi|15815238|gb|BI787513.1|BI787513
EST:     TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAG                         GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
genomic: TCCCCTAGGCGTTTCAGGAGCCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
EST: gi|17519672|gb|BM188714.1|BM188714
EST:     CCCACCACCGCGTGGAAGAACTCCTCCAAG                         GTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA
genomic: CCCACCACCGCGTGGAAGAACTCCTCCAAGgttttttgtt ... ctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcattgtgttcaataatgttagcggcatgattatatttgaaaacctgtatgtagGTATCGAAGCAGGAGGAGCAGGACACCATCTGTTTCACGCAGTCCACGATATCGAGCTCGACGATATAGCCGAAGTAGGAGCCCAGTTCGTAGTAGGAGT
                           atgattatatttgaaa  TA-rich tract