Sequence
atgc intronic sequence ATGC exonic sequencegttagtttcccgctgctacatattataatgagcatattacagtcataatgttattaaagtcaatttgaatttttatgtcatcagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCC
Basic information
species | Glycine max |
transcript | GLYMA06G04230.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G04230.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os11g40080.1 (Oryza sativa), 3'ss of exon 7
---------------------gttagtttcccgctgctacatattataatgag------catattacagtcataatgttattaaagtcaa--tttgaatt-tttatgtcat-cagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCC
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gtcagtactcagcaacacaaagataaatatatgaacatacattgaataattgcttgctcttcattgcgctcatgaaataattcgtaccaagtcttgattcacctgtttcacacagGCTATCAAAGCACTATTTCCTCCTGACTCAAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTA
upper sequence: GLYMA06G04230.1 (Glycine max), 3'ss of exon 14
lower sequence: AT5G42870.2 (Arabidopsis thaliana), 3'ss of exon 8
gttagtttcccgctgctacatattataatgagcatattacagtcataatgttattaaagtcaatttgaattttt--atgtcatcagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCC
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gttagttttatgcgggt-ttttttatgtctgttgaactctcatgtcctctgaactacgtttaactcggtttttccaaaatatacagGAGATACGGGGCTTGTTTCCTCCCGAACACAACCCATTCTATGCTGGTTTTGGAAACAGAGACACAGATGAGATAAGCTACCTTAAAGTCGGAATCCCCC
upper sequence: GLYMA06G04230.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 3'ss of exon 10
-------------gttagtttcccgctgctacatattataatgagcatattacagtc---ataatgttattaaagtcaatttgaatttttatgtcatcagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCC
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gtgtatggtctttgtgcatgcccggatcatttgttggatgagtggaaggttaaggatgaaaaaaggtagctaataatgcttttagttccccaattttcagGATATCAAGGCATTATTTCCTTCTGATTGCAATCCATTCTATGCTGGTTTTGGAAACCGGGACACTGATGAGTTTAGCTACCTTAAGGTTGGAATTCCAAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|27426468|gb|CA937988.1|CA937988EST: TTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAG GACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTT
genomic: TTATTAGGAGGGTTCCTCATGAATTCAAAATTGCATGCTTAGAGgttagtttcc ... atgtcatcagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gagcatattacagtcataatgttattaaagtcaatttgaatttttatgtcatcagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCC
tttttat CT-rich tract
tcataatgttattaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttagtttcccgctgctacatattataatgagcatattacagtcataatgttattaaagtcaatttgaatttttatgtcatcagGACATCAAGGCACTTTTTCCTTCTGATAGCAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT