Sequence
atgc intronic sequence ATGC exonic sequencegtatgcttttttcccctaattataaggaatattgtgtatgacggaaaattagagctagttatatatgatgctgttctgttggatgctatttcagTTACTTGAAATTATGGGAGGGTTCACACCAGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGGCTGGCAGTTC
Basic information
species | Glycine max |
transcript | GLYMA06G00600.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv03s0038g02340.t01 (Vitis vinifera), 3'ss of exon 14
gtatgcttttttcccctaattataaggaatattgtgtatgacggaaaattagagctagttatatatgatgctgttctgttggatgctatttcagTTACTTGAAATTATGGGAGGGTTCACACCAGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGGCTGGCAGTTC
|||||||| || | | ||| || | | || | | || | || || | ||| ||| |||| | |||||||||||||| |||||||||| |||| ||||||||||| || |||||||| || || || ||||| |||||||| ||||| ||||| || |||||||| |
gtatgcttcttctctggatttacaaagt-tgatgcaagggggttttattttgctttatttcattcatatgatgtcttgtttctgaccttttcagTTACTTGAGATTATGGGAGAATTCAACCCAGAGCAGCAGCGGGCCTTCTGCCAGTTCGTCACTGGCGCACCTAGACTGCCGCCTGGTGGTCTGGCAGTGC
upper sequence: GLYMA06G00600.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv04s0023g03830.t01 (Vitis vinifera), 3'ss of exon 14
------------gtatgcttttttcccctaattataa-ggaatattgtgtatgacggaaaattagagctagtta-tatatgatgctgttctgttggatgctatttc-----agTTACTTGAAATTATGGGAGGGTTCACACCAGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGGCTGGCAGTTC
||| || | | | || || | | | || | | | || | | || | | | ||||| |||| | |||| || | ||||||||||||| ||||||| ||||| || |||||||| | ||| ||||| ||||| ||||||||||||||||||| || |||||||| |||||| |
gtaagattcttcctatatttggggcatttggatttagtgggaaacagggtgtaatgataactcttatatattgactgcatgat-ttgtttattgtaatgcctttgctttctagTTACTTGAAATCATGGGAGAATTCACTCCTGAGCAGCAGCATGCATTCTGCCAATTCATTACTGGTGCACCTAGGCTTCCTCCTGGAGGTCTGGCAATGT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gacggaaaattagagctagttatatatgatgctgttctgttggatgctatttcagTTACTTGAAATTATGGGAGGGTTCACACCAGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGGCTGGCAGTTC
ctatttc CT-rich tract
tagttatatatgat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcttttttcccctaattataaggaatattgtgtatgacggaaaattagagctagttatatatgatgctgttctgttggatgctatttcagTTACTTGAAATTATGGGAGGGTTCACACCAGAGCAGCAACGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGCTGCCACCTGGAGGGCTGGCAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG