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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtagttgtgctgtttctgtttttcaagctgagggaaggaattaaactgatctctctgtttttcatatttgtatttcttagCCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCAGAG

Basic information

species Glycine max
transcript GLYMA06G00520.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 14
lower sequence: AT5G06120.3 (Arabidopsis thaliana), 3'ss of exon 21
gttggtagttgtgctgtttctgtttttcaagctgagggaaggaattaaact--gatctctctgtttttcatatttgtatttcttagCCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCAGAG
|||   ||||   ||  ||   |||  ||  |  ||  | |  |  |   |  ||| | |      ||  | |||| |||||  |||||  |||  ||||| ||||||||||| ||| | ||||||||||||||||| || || || | |||  |||||||||||   ||||| ||||||
gttttgagttcatctagttac-tttgacatccatagacatgttacaatcttatgatttattgaagctttctctttggatttc--agCCGGAGAAGCTATGGTTTTCTATTTGACTGGCTCTATCCTGCACACATGCCACTCCTTTTGAGAGGGGTCTCACATTGGTTCGACACACCAGAG

upper sequence: GLYMA06G00520.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0067g01920.t01 (Vitis vinifera), 3'ss of exon 22
gttggtagttgtgctgtttctg--tttttcaagctgagggaaggaattaaactgatctctctgtttttcatatttgtatttcttagCCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCAGAG
||| | |  | |||| ||| ||  || ||||   | |   ||||   | ||| | ||| | | ||||   | |   | | | | |||||| |||| || ||  |||||||||||||||||||||||||||| ||||| || ||||| |||||||| || || ||||| || || ||||||
gtttgcacgtatgctatttttgggttcttcattgtcaactaagg---tcaaccggtct-tatattttctgtctgaatgtctttcagCCGCAGAACTTACGGGCTTCTATTTGATTGGTTGTATCCTGCACATATGCCACTTCTCTTGAAAGGCATTTCGCACTGGACCGATACACCAGAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agctgagggaaggaattaaactgatctctctgtttttcatatttgtatttcttagCCGCCGAACATATGGATTTCTATTTGATTGGTTGTATCCTGCACACATGCCTCTACTCTTAAAAGGCATCTCACATTGGACAGACACCCCAGAG
                  aactgat  putative branch site (score: 3)
                                             tatttctt  putative PPT
                                tttttcatatttgtat  TA-rich tract