Sequence
atgc intronic sequence ATGC exonic sequence...gtcacttcaattctgtgcatttgtcaatagacctagtgtgtgcttgtgttgctatttagagtatggacttattaacgtggttttgttcaaattaaaatagGTCTTACTGAAACCTGTGCTGGAACCTTTGTTTCATTACCAAATGAAAAGGACATGCTTGGTACGGTGGGGCCTCCTGTACCATATGTGGATGTGCGTCT
Basic information
species | Glycine max |
transcript | GLYMA05G36910.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G36910.1 (Glycine max), 3'ss of exon 14
lower sequence: AT4G23850.1 (Arabidopsis thaliana), 3'ss of exon 14
gtcacttcaattctgtgcatttgtcaata-gacctagtgtgtgcttgtgttgctatttagagtatggacttattaacgtggttttgttcaaattaaa-atagGTCTTACTGAAACCTGTGCTGGAACCTTTGTTTCATTACCAAATGAAAAGGACATGCTTGGTACGGTGGGGCCTCCTGTACCATATGTGGATGTGCGTCT
| | | ||| | | || || |||| | || | | ||| |||| ||| ||| | | || | | || | | |||||||||||||| |||||||||||| ||||| || | ||| ||||| | ||||| || || || || || || || ||| | || ||| | || ||
gcctcgtcatgcatctttgccatccagagtgatgtagtatatgatc-cctcactaac-agagaatgtgattagttgtccgtttgttgttgtatcatttacagGTCTTACTGAAAGCTGTGCTGGAACTTTTGTCTCGCTGCCAGATGAACTAGGTATGCTCGGCACAGTTGGTCCACCAGTGCCAAACGTTGATATACGCCT
upper sequence: GLYMA05G36910.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv02s0025g01410.t01 (Vitis vinifera), 3'ss of exon 14
-----------------------------------------------------------------------------------------------gtcacttcaattctgtgcatttgtcaatagacctagtg-tgtgcttgtgttgctatttagagtatggacttattaacgtggttt-tgttcaaattaaaatagGTCTTACTGAAACCTGTGCTGGAACCTTTGTTTCATTACCAAATGAAAAGGACATGCTTGGTACGGTGGGGCCTCCTGTACCATATGTGGATGTGCGTCT
| || | | | | ||| || ||||| ||||| || ||| | || | || | || | ||| | || | |||| ||||||| |||||||| ||||| || || ||||| ||| | |||||||||| |||||||||||| ||||| ||||| |||||| |||| || || | ||
gtatgcagtccattgaaattagtgtctacctgtcttatcctttttgactgtttctttgtgaagcattgaaattgaaatttcgttggcacctttgagaaacatatgtccaaagtttttttcc-cgtttctagtactgtgcaaa-gtagctttctacatggtgaatttggatctttattttgtattaatgttaatgtagGTCTGACTGAAACTTGTGCGGGCACATTTGTCTCACTGCCAAATGAAATTAGCATGCTTGGTACAGTGGGCCCTCCAGTACCAAATGTTGACGTATGCCT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtgttgctatttagagtatggacttattaacgtggttttgttcaaattaaaatagGTCTTACTGAAACCTGTGCTGGAACCTTTGTTTCATTACCAAATGAAAAGGACATGCTTGGTACGGTGGGGCCTCCTGTACCATATGTGGATGTGCGTCT
tattaac putative branch site (score: 1)
ttttgttcaaattaaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtcacttcaattctgtgcatttgtcaatagacctagtgtgtgcttgtgttgctatttagagtatggacttattaacgtggttttgttcaaattaaaatagGTCTTACTGAAACCTGTGCTGGAACCTTTGTTTCATTACCAAATGAAAAGGACATGCTTGGTACGGTGGGGCCTCCTGTACCATATGTGGATGTGCGTCT
- cacttca
- - - - - - - -tgcattt
- - - - - - - - - - - - - - - - - -gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - tgttgct