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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcacaccacttttttcccctttctttaagatttaacattgaaagcaaaggcgtctattatgataacaccatgtaaacttatgtacacagTGTTGTCTCAATTCATATTCGTGGGAAGGACTTGAAGACTGGTTCTACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT

Basic information

species Glycine max
transcript GLYMA05G35130.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 14
lower sequence: AT1G73860.1 (Arabidopsis thaliana), 3'ss of exon 15
--gtcacaccacttttttcccctttctttaagatttaacattgaaagcaaaggcgtctattatgataacacca----tgtaaacttatgtacacagTGTTGTCTCAATTCATATTCGTGGGAAGGACTTGAAGACTGGTTCTACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT
      |  ||  ||  ||| ||      || |   |    ||    |||  ||        |  | ||||      | ||   ||   ||  |||  ||||| |  ||||  |||| || || || || ||||| |||||     |    ||||||||||||||||| ||| ||||||||||||| || ||||||
gttctccttcatattcatcctctagaaccaaaacaaatatgtgttttcaacagccctccaggtttttacactgaatctatatgttttcttatgcagCATTGTCACTGTTCACGTTCGCGGTAAAGATTTAAAGACCGGTTCCGTGCTATACGGTAATCTTCATTTGGTGGATCTGGCAGGAAGTGAGAGAGTAGAT

upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 14
lower sequence: AT1G18410.1 (Arabidopsis thaliana), 3'ss of exon 15
--------------------------gtcacaccacttttttcccctttctttaagatttaa----cattgaaagcaaaggcgtctattatgataacacc-atgtaaacttatgtacacagTGTTGTCTCAATTCATATTCGTGGGAAGGACTTGAAGACTGGTTCTACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT
                                    | ||||  | ||   |  | | |||     | | |         |     |  |  |||||    ||  |   ||    |  |||  ||||| |  ||||| ||||||| ||||||||||||||||||||| |  ||  ||| ||||| |||||||||||| | ||||| ||||| || || |||
gtgctcatattgatctctgaaacaaacatgtgtttttcttttatcattctctagatagttaggtctcctagggtatttgagaaaagacaaaaataacttggatagatgattcctaatgcagCATTGTCACTGTTCATGTTCGTGGCAAGGACTTGAAGACTGGTTCTGCGCTGTATGGAAATCTACATTTGGTAGATCTAGCAGGTAGTGAGAGAGTTGAT

upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv17s0000g03700.t01 (Vitis vinifera), 3'ss of exon 16
gtcacaccacttttttcccctttctttaagatttaacattgaaagcaaaggcgtctattatgataacacc---atgtaaacttatgtacacagTGTTGTCTCAATTCATATTCGTGGGAAGGACTTGAAGACTGGTTCTACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT
          | |  |  | ||| |  |   |   |  || | |    |   ||     ||| ||  | |   |  || |  | |     |||| ||||  | ||||||  | | |||| ||| |||||||||||| || || ||  ||| | |||||| ||||| ||| | |||||||||||||||||||||
--------gttgtcatttcatttttagatattaccatcttcagactgtatatgttctacatgttatgatcttcacttagatgtgttattgcagTATTGTAACTATTCATGCTTGGGGGACGGATTTGAAGACTGGTGCTTCTTTGCGTGGCAGTCTTCACTTGGTGGATCTTGCAGGAAGTGAAAGGGTAGAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acattgaaagcaaaggcgtctattatgataacaccatgtaaacttatgtacacagTGTTGTCTCAATTCATATTCGTGGGAAGGACTTGAAGACTGGTTCTACTATGGTTGGTAATCTTCATTTGGTAGATTTGGCAGGAAGTGAAAGGGTAGAT
                         tgataac  putative branch site (score: 2)
                    tattatgataa  TA-rich tract