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...agaagctgtattacaatggatggagctgttattttatgcaaatacttttactactaaatatgcatgcatgttgatgaaccatgcatggtgttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCAAATGCAGAAGACGCATATTACAAGGCCGTGGGAGTTGATATGTTTAACT
species | Glycine max |
transcript | GLYMA05G30830.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGG GTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCAEST: gi|207713488|gb|GD696171.1|GD696171
genomic: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGGgtatgttaat ... ttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCA
EST: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGG GTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCAEST: gi|13312427|gb|BG406078.1|BG406078
genomic: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGGgtatgttaat ... ttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCA
EST: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGG GTGAGGGAGAGATGTAAA-GGGAGTGGACAATGTTCCAGAGTCGGTTGGCAEST: gi|7146333|gb|AW508255.1|AW508255
genomic: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGGgtatgttaat ... ttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCA
EST: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGG GTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCAEST: gi|193459553|gb|FK423410.1|FK423410
genomic: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGGgtatgttaat ... ttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCA
EST: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGG GTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCAEST: gi|14009195|gb|BG725799.1|BG725799
genomic: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGGgtatgttaat ... ttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCA
EST: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGG GTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCA
genomic: GGAGAATCACAATCTGGGAAAGCGCCATGGCAAGGGgtatgttaat ... ttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCA
ttttactactaaatatgcatgcatgttgatgaaccatgcatggtgttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCAAATGCAGAAGACGCATATTACAAGGCCGTGGGAGTTGATATGTTTAACT
tactaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaagctgtattacaatggatggagctgttattttatgcaaatacttttactactaaatatgcatgcatgttgatgaaccatgcatggtgttggtggcagGTGAGGGAGAGATGTAAAAGGGAGTGGACAATGTTCCAGAGTCGGTTGGCAAATGCAGAAGACGCATATTACAAGGCCGTGGGAGTTGATATGTTTAACT
-gaagctg
- - - - - - - - - gatggag
- - - - - - - - - - - - - - - - - tatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatgca