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...ctcttaaataagggtccaatcaattactataatttcatccacttcaccctctaagaggagtcaaagtcaaatcctatattaatcttatatctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATATGCAAAGACATCATATCTGGCTAAGGTTCTTCCTGACAAAAGCATCAC
species | Glycine max |
transcript | GLYMA05G30770.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAG GGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATEST: gi|58024532|gb|CX711273.1|CX711273
genomic: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAGgtctctgtct ... ctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATAT
EST: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAG GGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATEST: gi|58024320|gb|CX711061.1|CX711061
genomic: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAGgtctctgtct ... ctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATAT
EST: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAG GGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATEST: gi|58017989|gb|CX704731.1|CX704731
genomic: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAGgtctctgtct ... ctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATAT
EST: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAG GGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATEST: gi|214009834|gb|DB990343.1|DB990343
genomic: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAGgtctctgtct ... ctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATAT
EST: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAG GGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATEST: gi|151401219|gb|EV271033.1|EV271033
genomic: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAGgtctctgtct ... ctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATAT
EST: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAG GGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATAT
genomic: AAATGTTAATTCTGGTGGGATTCGCTCTTGGATCGCAACAGGAAGAACAGgtctctgtct ... ctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATAT
accctctaagaggagtcaaagtcaaatcctatattaatcttatatctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATATGCAAAGACATCATATCTGGCTAAGGTTCTTCCTGACAAAAGCATCAC
tattaat putative branch site (score: 2)
tctctattc putative PPT
tatattaatcttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttaaataagggtccaatcaattactataatttcatccacttcaccctctaagaggagtcaaagtcaaatcctatattaatcttatatctctattcagGGGAAATCTATCTTGCTTTCTTCAATCTAAGCGAACAGAAGACGGAGATATATGCAAAGACATCATATCTGGCTAAGGTTCTTCCTGACAAAAGCATCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - -ccaatca
- - - - - - - - - - - - - - - - - tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaatcc