Sequence
atgc intronic sequence ATGC exonic sequence...tttttgttgaaataatctctaatttgccaattatctttccaaaaattgttatattcttcatgaaactgcaaattgaatgcaggaatatgtactgctttagCTATCAATCTGGCAAATTGGAGCATCTAATGAAG
Basic information
species | Glycine max |
transcript | GLYMA05G30430.2 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os01g21940.1 (Oryza sativa), 3'ss of exon 13
tttttgttgaaataatctctaatttgccaattatctttccaaaaa-ttgttatattcttcatgaaactgcaaattgaa-------tgcaggaatatgtactgctttagCTATCAATCTGGCAAATTGGAGCATCTAATGAAG
| || | | || || ||| ||| || | || | |||| | || | | | | | |||||||| ||||| ||||||||||| || || || ||| |||||||||||||||||
---gtaaggatactgtgataaagttcttcattgcattttcatcatcttagtttattttgagtgccatcatgactcgtacttattttgcagGAACATGTATTGCTTTAGCTACCAGTCCGGTAAACTGGAGCATCTAATGAAG
upper sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G037683_T01 (Zea mays), 3'ss of exon 13
------tttttgttgaaataatctctaatttgccaattatctt--tccaaaaattgttatat---tcttcatgaaactgcaaattgaa-------tgcaggaatatgtactgctttagCTATCAATCTGGCAAATTGGAGCATCTAATGAAG
| | | || ||| | | ||| | | | | | ||||||| | ||| |||| | |||||| | |||||||| ||||| ||||||||||| |||||||| ||| |||||||||| ||||||
gtgaggatatactagatatatttcttgcattgtctaatgcttcgattttgtgtttgttatcttggtctgtatgacatc-taaattggagttgttttgcagGAACATGTATTGCTTTAGCTACCAATCTGGTAAACTGGAGCATCTGATGAAG
upper sequence: GLYMA05G30430.2 (Glycine max), 3'ss of exon 14
lower sequence: Vv17s0000g08930.t01 (Vitis vinifera), 3'ss of exon 14
--------------tttttgttgaaataatctctaatttgccaattatctttccaaaaattgttatattcttcatgaa----actgcaaattgaatgcaggaatatgtactgctttagCTATCAATCTGGCAAATTGGAGCATCTAATGAAG
|| | | ||| | ||| | | | | ||| || | || || |||| || ||| |||||||| |||||||| ||||| ||||| || ||||| |||||||||||||||
actttagtatatgattcccatgtgcctgttcttgtctctgctggatttactgcaggtgtcggttctactattagctaactgaactgttgatcatatgtagGAATATCTACTGCTTCAGCTACCAATCGGGTAAATTAGAGCATCTAATGAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttatattcttcatgaaactgcaaattgaatgcaggaatatgtactgctttagCTATCAATCTGGCAAATTGGAGCATCTAATGAAG
ctgcttt CT-rich tract
aaattgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttttgttgaaataatctctaatttgccaattatctttccaaaaattgttatattcttcatgaaactgcaaattgaatgcaggaatatgtactgctttagCTATCAATCTGGCAAATTGGAGCATCTAATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - tgttgaa
- - - - - - - - - - - - tgccaat
- - - - - - - - - - - - - - - - - ctttcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aactgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaatgca