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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgtttaatctaaaaataatttaaaacatcttaagtactggactactatctttgtatttttaagtttatgttgatcagtttcctggtcttccttctaatgtatgtatacattgtcccagGTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGG

Basic information

species Glycine max
transcript GLYMA05G28950.2
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G28950.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv06s0004g00500.t01 (Vitis vinifera), 3'ss of exon 12
gttagttgtttaatc-taaaaataatttaaaacatcttaagtactggactactatctttgtatttttaagtt-tatgttgatcagtttcctggtcttccttctaatgtatgtatacattgtc-------ccagGTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGG
||| ||  ||  | | |  |    ||| || | ||  | || | |    |  |   ||| |   | | | || | |||  |  |  || ||  | |  ||     ||     | | | |  |       |||||||||||| || ||||||||||||||||| || ||||| ||    |||||||| |||||||||||  || | |||||||| ||||||||||||
gtttgtctttctaccatttatgatattcaacatattattagcattttttttttgcttttatgcctgtcatttatgtgtcaaggaagtttctactatgtctatgtttggcctcacaaactaacttctgatccagGTGGGTGAAATTTTGGGAACTTTGATCAAGACATTCAAGGCATCTTTCTTGCCATTCTTTGATGAGTTAGCTTCATATCTCACACCTATGTGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820642|gb|BE556152.1|BE556152
EST:     GGGAACTGATTAAAGAGGAAAATGAACAAGAGGAGGAAGTTTTTGATCAA                         GTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTG
genomic: GGGAACTGATTAAAGAGGAAAATGAACAAGAGGAGGAAGTTTTTGATCAAgttagttgtt ... attgtcccagGTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTG
EST: gi|21677277|gb|BQ629628.1|BQ629628
EST:     GGAAAATGAACAAGAGGAGGAAGTTTTTGATCAA                         GTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTG
genomic: GGAAAATGAACAAGAGGAGGAAGTTTTTGATCAAgttagttgtt ... attgtcccagGTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTG
EST: gi|21887848|gb|BQ741061.1|BQ741061
EST:     GGGAACTGATTAAAGAGGAAAATGAACAAGAGGAGGAAGTTTTTGATCAA                         GTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTG
genomic: GGGAACTGATTAAAGAGGAAAATGAACAAGAGGAGGAAGTTTTTGATCAAgttagttgtt ... attgtcccagGTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTG
EST: gi|17153820|gb|BM143753.1|BM143753
EST:     GGGAACTGATTAAAGAGGAAAATGAACAAGAGGAGGAAGTTTTTGATCAA                         GTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTG
genomic: GGGAACTGATTAAAGAGGAAAATGAACAAGAGGAGGAAGTTTTTGATCAAgttagttgtt ... attgtcccagGTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttatgttgatcagtttcctggtcttccttctaatgtatgtatacattgtcccagGTGGGTGAGATATTGGGAACTTTGATCAAAACCTTCAAAGCCAACTTCTTGCCTTTCTTTGATGAACTATCATCATATCTGACACCTATGTGG
                            ttctaat  putative branch site (score: 2)
                                              ttgtccc  putative PPT
                               taatgtat  TA-rich tract