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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtcaactgtcaattcctatatcgcagttttgttttcttatattcctgtctctgctctacctgtttcagacgtaaaatatctttctattgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTGGACCAAATAACTGTTGTAAACTTAGTGAATGTTATCAACAGAGGGGAA

Basic information

species Glycine max
transcript GLYMA05G25980.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51337544|gb|CO981410.1|CO981410
EST:     GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaac ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
EST: gi|208059101|gb|GD856151.1|GD856151
EST:     GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTA
genomic: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaac ... tgacttgcagAATTGAAGAATTTAATTCTCTA
EST: gi|207828744|gb|GD800869.1|GD800869
EST:     GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTATTTAATCA
genomic: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaac ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCA
EST: gi|208236812|gb|GE029290.1|GE029290
EST:     GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAG                         AATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT
genomic: GTAGATGATAACTCAGCAGCTCAAGCTGCTGTTGGACTCACCCCTGAAAGgttggtcaac ... tgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcctgtctctgctctacctgtttcagacgtaaaatatctttctattgacttgcagAATTGAAGAATTTAATTCTCTATTTAATCAGCATATGCATGCCAACCGCCTGGACCAAATAACTGTTGTAAACTTAGTGAATGTTATCAACAGAGGGGAA
                                          tattgac  putative branch site (score: 2)
                                    tctttctatt  CT-rich tract
                             taaaatatctttctat  TA-rich tract