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gtcactctcatttccatttccaacattaactaaacctctgaagccccactcttccatctaacacctgtggcaaaaattatagatgatagactaaatcaagactaaagataaaactcatcttgcaaaggatctagaacaatactatgagctattgcttattctttccattttaagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGTAGGACCTCAAAGATCAAGAAATGTCCAAGCATGTTCTGCAGTTCTGGA
species | Glycine max |
transcript | GLYMA05G04600.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAG ATAGGAGATATTGGAAGCAGGGAGTAAAGCTTEST: gi|207784650|gb|GD757757.1|GD757757
genomic: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGgtcactctca ... aagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTT
EST: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAG ATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGEST: gi|207809080|gb|GD781714.1|GD781714
genomic: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGgtcactctca ... aagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAG
EST: CTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAG ATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGEST: gi|193553500|gb|FK510473.1|FK510473
genomic: CTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGgtcactctca ... aagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAG
EST: TG-CTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAG ATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGEST: gi|193592323|gb|FK546591.1|FK546591
genomic: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGgtcactctca ... aagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAG
EST: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAG ATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGEST: gi|208132995|gb|GD928674.1|GD928674
genomic: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGgtcactctca ... aagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAG
EST: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAG ATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACGCCTAGAACAGEST: gi|193437656|gb|FK400485.1|FK400485
genomic: TGACTGGGTGATGGATTTGCAAAATTCTGTTGTGATATCAACTGGTCCAGgtcactctca ... aagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAG
EST: CAACTGGTCCAG ATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAG
genomic: CAACTGGTCCAGgtcactctca ... aagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAG
ggatctagaacaatactatgagctattgcttattctttccattttaagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGTAGGACCTCAAAGATCAAGAAATGTCCAAGCATGTTCTGCAGTTCTGGA
ttctttccatttta CT-rich tract
attttaagatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcactctcatttccatttccaacattaactaaacctctgaagccccactcttccatctaacacctgtggcaaaaattatagatgatagactaaatcaagactaaagataaaactcatcttgcaaaggatctagaacaatactatgagctattgcttattctttccattttaagattgcagATAGGAGATATTGGAAGCAGGGAGTAAAGCTTCTTGGAACACCTAGAACAGTAGGACCTCAAAGATCAAGAAATGTCCAAGCATGTTCTGCAGTTCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG