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...atgagtttgatatcttctgaaatatttatcatgaatgtgctttatttgtgtcaggttctttatctgatgggattatttatgattaaacacatatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG
species | Glycine max |
transcript | GLYMA05G01300.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAEST: gi|9898827|gb|BE607795.1|BE607795
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAEST: gi|8826963|gb|BE210693.1|BE210693
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG GAAGTTGGTGGCAATTCAGTGAATGGTACTACTTATGCTGGTCTAAGAGCAEST: gi|19346874|gb|BM891762.1|BM891762
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAEST: gi|27427456|gb|CA938976.1|CA938976
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAEST: gi|17020750|gb|BM091784.1|BM091784
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: TGTAGTTTCAAATGATCCTTTGTTTTTACAG GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAEST: gi|8827894|gb|BE211624.1|BE211624
genomic: TGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: TAACCATTTAACGGGTGCTGTAGGTTCAAATGATTCCTTTGTTTT-ACAG GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTTGTCTTAGAGCAEST: gi|7926202|gb|AW832228.1|AW832228
genomic: TAACCATTTAACGGCTGCTGTAGTTTCAAATGAT-CCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAEST: gi|15203001|gb|BI425769.1|BI425769
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
EST: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAG GAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
genomic: ATAACCATTTAACGGCTGCTGTAGTTTCAAATGATCCTTTGTTTTTACAGgcaagacttt ... atatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCA
ttgtgtcaggttctttatctgatgggattatttatgattaaacacatatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG
atctgat putative branch site (score: 4)
attatttatgattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgagtttgatatcttctgaaatatttatcatgaatgtgctttatttgtgtcaggttctttatctgatgggattatttatgattaaacacatatttgcagGAAGTTGTTGGCAATTCAGTAAATGGTACTACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC