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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggcatccacatattataaattggataaacaaagtgatactattaagctttgactgccttatcttgcttacatattgcttggttcatacggctgcagTGTCTCTTCCTTGGCTTGGTTTATGTCAAATCAAGAAACTAGCTTTGTAACCTTGGCCCAACGAGTTTTAGCAAATCCTCTCAA

Basic information

species Glycine max
transcript GLYMA04G36710.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G36710.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv17s0000g10010.t01 (Vitis vinifera), 3'ss of exon 31
gttggcatccacatattataaattggataaacaaagtgatactattaagctttgactgccttatcttgcttacatattgcttggttcatacggctgcagTGTCTCTTCCTTGGCTTGGTTTATGTCAAATCAAGAAACTAGCTTTGTAACCTTGGCCCAACGAGTTTTAGCAAATCCTCTCAA
|||||  ||    | || |       ||  |     || |  | ||   ||   | |  ||  |     |||  || ||  |  || |||    ||||||||||| || || || |||||||||||||||||||||||||||||||| ||||||| |||||||||||| || | |||||||||
gttgg--tctttgttttcttgccaacatggatt---tggttttgttgctctgataatctctcttaacaattatgtaatggata-tttata----tgcagTGTCTCATCTTTAGCCTGGTTTATGTCAAATCAAGAAACTAGCTTTGTGACCTTGGGCCAACGAGTTTTGGCTAGTCCTCTCAA

upper sequence: GLYMA04G36710.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ07568 (Selaginella moellendorffii), 3'ss of exon 36
gttggcatccacatattataaattggataaacaaagtgatactattaagctttgactgccttatcttgcttacatattgcttggttcatacggctgcagTGTCTCTTCCTTGGCTTGGTTTATGTCAAATCAAGAAACTAGCTTTGTAACCTTGGCCCAACGAGTTTTAGCAAATCCTCTCAA
                                   ||     || |    |||||  |   ||| || || ||          ||   |     |||||||| ||||| |||||||||||||||||||  || |||||||| ||||| || ||||  ||| ||||| | ||||| ||||| ||
-----------------------------------gtttgtttactggtttttgaagga--tattttactaac--------cagtatgtgttcttgcagTGTATCTTCTTTGGCTTGGTTTATGTCAAGCCAGGAAACTAGTTTTGTTACGTTGGGGCAAAGAGTTCTTGCAAAGCCTCTGAA

upper sequence: GLYMA04G36710.1 (Glycine max), 3'ss of exon 14
lower sequence: EFJ05083 (Selaginella moellendorffii), 3'ss of exon 36
gttggcatccacatattataaattggataaacaaagtgatactattaagctttgactgccttatcttgcttacatattgcttggttcatacggctgcagTGTCTCTTCCTTGGCTTGGTTTATGTCAAATCAAGAAACTAGCTTTGTAACCTTGGCCCAACGAGTTTTAGCAAATCCTCTCAA
                                   ||     || |    |||||  |   ||| || || ||          ||   |     |||||||| ||||| |||||||||||||||||||  || |||||||| ||||| ||  |||  ||| | ||| | ||||| ||||| ||
-----------------------------------gtttgtttactggtttttgaagga--tattttactaac--------cagtatgtgttcttgcagTGTATCTTCTTTGGCTTGGTTTATGTCAAGCCAGGAAACTAGTTTTGTTACGCTGGGGCAAAGGGTTCTTGCAAAGCCTCTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaagctttgactgccttatcttgcttacatattgcttggttcatacggctgcagTGTCTCTTCCTTGGCTTGGTTTATGTCAAATCAAGAAACTAGCTTTGTAACCTTGGCCCAACGAGTTTTAGCAAATCCTCTCAA
                      tgcttac  putative branch site (score: 2)
                         ttacatatt  TA-rich tract