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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatcgcacttactctttatatacttgatatcttcaatttccttctgattgtcatcaataacatgttggctggtgttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTAAATAACAGTAATGTTGCTCTCATGGCAAAAAATAACTTTGCAGTCAACA

Basic information

species Glycine max
transcript GLYMA03G36910.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7692270|gb|AW760381.1|AW760381
EST:     TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACA                         GTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
EST: gi|22929581|gb|BU546720.1|BU546720
EST:     TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACA                         GTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
EST: gi|31463893|gb|CD405921.1|CD405921
EST:     TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACA                         GTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
EST: gi|22928514|gb|BU545653.1|BU545653
EST:     TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACA                         GTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA
genomic: TTGAAAACATGCTTGCTGCAGCTCATGCAGTATATGATCCCAACAGAACAgtaatcgcac ... ttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttcaatttccttctgattgtcatcaataacatgttggctggtgttgatcgtagGTTATTCATATAGATCCCAACAACAAAGACGAGATGGAATTTTGGGAAGTAAATAACAGTAATGTTGCTCTCATGGCAAAAAATAACTTTGCAGTCAACA
                       atcaataa  TA-rich tract