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...gtttcatggtggcatgttatcgaaatataattttactgtgactgaaattttcatcaatatttgtattgcatagtcttcacaagtctgtaatgttttgtagGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAA
species | Glycine max |
transcript | GLYMA03G34890.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCTCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCGCCACAG GTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATEST: gi|207837228|gb|GD808848.1|GD808848
genomic: GGGAGCTCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCGCCACAGgtttgtataa ... tgttttgtagGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
EST: TTGAATCCGCCACAG GTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATEST: gi|254319235|gb|GR830583.1|GR830583
genomic: TTGAATCCGCCACAGgtttgtataa ... tgttttgtagGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
EST: GGAGCTCGCAACATTGC-ACAGCCTTGGAGTAATTTGAATCCGCCACAG GTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATEST: gi|254324292|gb|GR840609.1|GR840609
genomic: GGAGCTCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCGCCACAGgtttgtataa ... tgttttgtagGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
EST: GGGAGCTCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCGCCACAG GTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
genomic: GGGAGCTCGCAACATTGCAACAGCCTTGGAGTAATTTGAATCCGCCACAGgtttgtataa ... tgttttgtagGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGAT
aattttcatcaatatttgtattgcatagtcttcacaagtctgtaatgttttgtagGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAA
atcaatatttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcatggtggcatgttatcgaaatataattttactgtgactgaaattttcatcaatatttgtattgcatagtcttcacaagtctgtaatgttttgtagGTTGTGGCGGCTGTTGGCTTTAAGGGAAAAAGACTTGAGATACCACGTGATTTAAATCCTCAATTAGCCTCAATAATTGAGGCTTGTTGGGCCAA
- - catggtg
- - - - - -gcatgtt
- - - - - - - - - - - aaatataa
- - - - - - - - - - - - - - - - - - -gtgactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tattgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtctgta