1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...aaggtaaaatggaaggccataagtgtacatgagattcatattgagccatgtacagagtttgcaggcagaaaatttttgtctaccttaatatctgtgatagATTTTAATGCAGTTTATATATTTTCGCTGTTGGACCTCCCAAGCCCTGTAGAGCAATTACAAGCATCAATTGTTGCCTATTGAGGAAGAAACAAGGATAT
species | Glycine max |
transcript | GLYMA03G27330.1 |
intron # | 14 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATTTGCCATGGCTAGTAGATGCTGGAGGGTGTGTCCTTCTTGANNNNNNN ATTTTAATGCAGTTTATATATTTTCGCTGTTGGACCTCCCAAGCCCTGTAGEST: gi|17021346|gb|BM092380.1|BM092380
genomic: ATTTGCCATGGCTAGTAGATGCTGGAGGGTGTGTCCTTCTTGATTTTTTTgtatcctttt ... tctgtgatagATTTTAATGCAGTTTATATATTTTCGCTGTTGGACCTCCCAAGCCCTGTAG
EST: ATTTGCCATGGCTAGTAGATGCTGGAGGGTGTGTCCTTCTTGANNNNNNN ATTTTAATGCAGTTTATATATTTTCGCTGTTGGACCTCCCAAGCCCTGTAG
genomic: ATTTGCCATGGCTAGTAGATGCTGGAGGGTGTGTCCTTCTTGATTTTTTTgtatcctttt ... tctgtgatagATTTTAATGCAGTTTATATATTTTCGCTGTTGGACCTCCCAAGCCCTGTAG
ccatgtacagagtttgcaggcagaaaatttttgtctaccttaatatctgtgatagATTTTAATGCAGTTTATATATTTTCGCTGTTGGACCTCCCAAGCCCTGTAGAGCAATTACAAGCATCAATTGTTGCCTATTGAGGAAGAAACAAGGATAT
taccttaat putative branch site
aaaatttttgtcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggtaaaatggaaggccataagtgtacatgagattcatattgagccatgtacagagtttgcaggcagaaaatttttgtctaccttaatatctgtgatagATTTTAATGCAGTTTATATATTTTCGCTGTTGGACCTCCCAAGCCCTGTAGAGCAATTACAAGCATCAATTGTTGCCTATTGAGGAAGAAACAAGGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - -tggaagg
- - - - - - - - - - - - - acatgag
- - - - - - - - - - - - - - - - - - - - - - - catgtac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcaggc