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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttggctttctttcacatttcaaaacctttttttttcattttcttcttcttttattaatagtacacgttggtgaccatttaattattatcatttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG

Basic information

species Glycine max
transcript GLYMA03G21610.2
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7028891|gb|AW458674.1|AW458674
EST:     TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCTAGTGTTTCAAACTCAG                         ATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCTAGTGTTTCAAACTCAGgtacattaac ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
EST: gi|10252527|gb|BE820293.1|BE820293
EST:     TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCTAGTGTTTCAAACTCAG                         ATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCTAGTGTTTCAAACTCAGgtacattaac ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
EST: gi|9900467|gb|BE609435.1|BE609435
EST:     TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCTAGTGTTTCAAACTCAG                         ATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
genomic: TTGTTTTCTTGGCTTGACTTTAGGTGTAAAGCCTAGTGTTTCAAACTCAGgtacattaac ... tttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttttattaatagtacacgttggtgaccatttaattattatcatttcctgcagATGTGGTCCAAAATGTATCTCAGGGTGTCAGAGAG
                                          tcatttcct  CT-rich tract
                           accatttaattattat  TA-rich tract