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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...agtcatcattgtttttcttgttctctatattttctttttctcccgctgaatgttttatgggaaaattatacatctatgcttatgtttttttatgaagcagGTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTCGATGAGTCTCTAGCCCAAGTGTGTTCTGAGAGTGGTGCAATGGATCCTC

Basic information

species Glycine max
transcript GLYMA03G03120.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 14
lower sequence: AT1G71820.2 (Arabidopsis thaliana), 3'ss of exon 14
-agtcatcattgtttttcttgttctctatattttctttttctcccgctgaatgttttatgggaaaattatacatctatgcttatgtttttttatgaagc-agGTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTCGATGAGTCTCTAGCCCAAGTGTGTTCTGAGAGTGGTGCAATGGATCCTC
   ||||||   |   || |    | | ||  || | | | | |   |   | |  | | | | | | ||  |||| | |||    | ||  ||   || |||| ||||| |||||||| || |||||||| ||  ||||||  ||||| || ||||| || ||||| ||||||||||||||||| ||| ||||||||||||
gcctcatcaaaatgcctcattcgttttttaccttgtctctgtgc-attaggtatcctttag-agagtgatgtatcttttctttctctcttcgatcttgctagGTGACTGGTTGGGTGGTAGAGTACCAAGAAAACTTGATTGCACTTGGTGTTGATGATTCACTAGCTCAAGTGTGTTCTGAGAGCGGTTCAATGGATCCTC

upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv12s0034g02360.t01 (Vitis vinifera), 3'ss of exon 13
agtcatcattg--tttttcttgttctctatattttctttttctcccgctgaatgttttatgggaa-aattatacatctatgcttatgtttttttatgaagcagGTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTCGATGAGTCTCTAGCCCAAGTGTGTTCTGAGAGTGGTGCAATGGATCCTC
  | ||||| |   |||| |   | | | |  ||  |||||       |     ||||||    | |||| |   | |||  || |  ||| ||   ||  |||||||||| ||||| |||||||||||||| ||||| ||||||||||| || ||||| ||| |||| ||||||||||||||||||||||| ||||||||||
--ttatcatagaacttttatcactgtttgtccttgtttttttagtttttttcccttttatcatcataattttttgtttataatttttgtttcttgc-aactagGTAACTGGTTGGGTTGTTGAATACCAAGACAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTGTGTTCTGAGAGTGGTGCTATGGATCCTC

upper sequence: GLYMA03G03120.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv03s0097g00670.t01 (Vitis vinifera), 3'ss of exon 13
agtcatcattg--tttttcttgttctctatattttctttttctcccgctgaatgttttatgggaaaattatacatctatgcttatgtttttttatgaagcagGTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTCGATGAGTCTCTAGCCCAAGTGTGTTCTGAGAGTGGTGCAATGGATCCTC
  | ||||  |   |||| |   | | | |  ||  |||||  |    |     |||      | |||| |   | |||  || ||| ||| |   ||  |||||||||| ||||| |||||||||||||||||||| ||||||||||| || ||||| ||| |||| ||||| ||||||||||||||||| ||||||||||
-cttatcacagaacttttatcactgtttgttcttgttttttagcttttttcccttttatcatcataattttttgtttataatt-tgtgtttcttgcaactagGTAACTGGTTGGGTTGTTGAATACCAAGATAATCTAATTGGGCTTGGTGTTGATGATTCTTTAGCTCAAGTTTGTTCTGAGAGTGGTGCTATGGATCCTC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664484|gb|BI701855.1|BI701855
EST:     GATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAG                         GTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTC
genomic: GATTGCTTAGCGACAGGGCGAATGAATTAACAAACATTGAGATATTAAAGgtatttttct ... tatgaagcagGTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaatgttttatgggaaaattatacatctatgcttatgtttttttatgaagcagGTAACTGGATGGGTGGTTGAATACCAAGATAATCTGATTGGGCTTGGAGTCGATGAGTCTCTAGCCCAAGTGTGTTCTGAGAGTGGTGCAATGGATCCTC
                                     tgttttttt  CT-rich tract
                                  ttatgtttttttatga  TA-rich tract