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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcttgaactgaagacacatatctgaatagttagtattattttattctgagcacacaataaacactttctttgttaaaatttgtgtgcacatgcagAATACGACTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAACTAATGCAG

Basic information

species Glycine max
transcript GLYMA03G02740.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA03G02740.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv15s0048g00970.t01 (Vitis vinifera), 3'ss of exon 13
--------------------------------------------------------------gtcttgaactgaagacacat--atctgaatagttagtattattttattctgagcacacaataaacactttctttgttaaaatttgtgt-gcacatgcagAATACGACTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAACTAATGCAG
                                                               | ||  | | || | |  |   | || | |   | || |     ||  || | |    ||    ||||| ||  ||||||||||| |  |  |||||| || | ||| ||||| |||| |||||| |||||||||| ||||| || || |||||||| |||||||| ||||| |||| || ||| |||||||||
gtgatatgctaaagatttttgtctgcataggaactgatgcaccatatttctaagtaatgtccattttttatttaaaataagtttgtttggaaatgaactaatgcaccatattgggta----atgtctacttttttatttaaaatttgtttcacttatgcagGATGCTACTTCTGAAAATAAATTGCGTCTGTTGATGATATATGCTTCCGTTTATCCTGAGAAGTTTGAAGGTGACAAAGGTTTAAAGCTAATGCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttattctgagcacacaataaacactttctttgttaaaatttgtgtgcacatgcagAATACGACTCCTGAATATAAGTTGCGTTTGTTGATGATTTATGCATCTGTCTATCCTGAAAAGTTTGAGGGTGATAAAGCTTCAAAACTAATGCAG
                        tttctttgttaaaatt  TA-rich tract