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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaaaggaacgaagcattggtttacatcaattgtctattctcacacaaatagaatgcaggtatggagatttttcactgacttgtttgttatgtttgattctagAATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCGGGGCTAATAACGTTCTATGGGTTGACACATCCACTAGATAAATCATGGCATGTACTTG

Basic information

species Glycine max
transcript GLYMA03G02250.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8827860|gb|BE211590.1|BE211590
EST:     TGTGGAAAAAGAAGGATATCACCGGCATATATCACAAGTGGCAGAATATG                         AATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCGGGGCTAATA
genomic: TGTGGAAAAAGAAGGATATCACCGGCATATATCACAAGTGGCAGAATATGgtaagcaaag ... ttgattctagAATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCGGGGCTAATA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atagaatgcaggtatggagatttttcactgacttgtttgttatgtttgattctagAATGAAGACAGGGTGCTGTGGAAGCTGGGGACGTTACCTCCGGGGCTAATAACGTTCTATGGGTTGACACATCCACTAGATAAATCATGGCATGTACTTG
                 agattttt  TA-rich tract