1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gtaagtatctgaatcctacaggtttcttgataagttgtttatttgttaacattagaaaatgtgggggcatgtgcaacaagtttttcaaggtatgaatttgctttcttgctttttgttaaatacttttttgatttttcatttcagTATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCG
species | Glycine max |
transcript | GLYMA03G01210.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: CCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCACTC TATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCGEST: gi|213588834|gb|DB984361.1|DB984361
genomic: CCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCACTCgtaagtatct ... ttcatttcagTATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCG
EST: CCCAACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCACTC TATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCGEST: gi|209714421|gb|BW659105.1|BW659105
genomic: CCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCACTCgtaagtatct ... ttcatttcagTATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCG
EST: CCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCACTC TATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCG
genomic: CCCCACCGTGAGAAGGGTTTCAGGACACGTTCTGTTAGTCTGGATCACTCgtaagtatct ... ttcatttcagTATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCG
gtatgaatttgctttcttgctttttgttaaatacttttttgatttttcatttcagTATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCG
ttttgat putative branch site (score: 4)
cttttttgatttttc CT-rich tract
tttttgttaaatactt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtatctgaatcctacaggtttcttgataagttgtttatttgttaacattagaaaatgtgggggcatgtgcaacaagtttttcaaggtatgaatttgctttcttgctttttgttaaatacttttttgatttttcatttcagTATGTGGTTTCATCGATCCGTAAAAGCTGATGACTGGGTGCTATTCGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT