1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtatgttaattttatactcaatccaattttccttttttgtaaaatcttcacattgccatcaccacgtgtcttggactctggggatcctgtttatgtacattgatatgttccttcaattctatttgcaacttggagtccattacaaggtgaagtgatttttaataccttgtttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCATTCTTACAGCCTTTACTAAAAGCCTGCAAG
species | Glycine max |
transcript | GLYMA02G45610.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGGCTCAAGTAGCTGATTGTCTTGATGGTG AATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCAEST: gi|193535849|gb|FK488781.1|FK488781
genomic: ATGAAGGCTCAAG-AGCTGA-TG-C-TGATGGTGgtatgttaat ... ttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCA
EST: CTGATAGAAGAGCTTAATTATGAAGGCTCAAGAGCTGATGCTGATGGTG AATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCATEST: gi|151404405|gb|EV274215.1|EV274215
genomic: CTGATAGAAGAGCTTAATTATGAAGGCTCAAGAGCTGATGCTGATGGTGgtatgttaat ... ttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCAT
EST: CTGATAGAAGAGCTTAATTATGAAGGCTCAAGAGCTGATGCTGATGGTG AATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCATEST: gi|58023254|gb|CX709995.1|CX709995
genomic: CTGATAGAAGAGCTTAATTATGAAGGCTCAAGAGCTGATGCTGATGGTGgtatgttaat ... ttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCAT
EST: CTGATAGAAGAGCTTAATTATGAAGGCTCAAGAGCTGATGCTGATGGTG AATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCATEST: gi|193369513|gb|FK333989.1|FK333989
genomic: CTGATAGAAGAGCTTAATTATGAAGGCTCAAGAGCTGATGCTGATGGTGgtatgttaat ... ttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCAT
EST: ATGAAGGCTCTAAGAGCTGATGTCTGATGGTG AATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCAEST: gi|193320839|gb|FK284778.1|FK284778
genomic: ATGAAGGCTC-AAGAGCTGATG-CTGATGGTGgtatgttaat ... ttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCA
EST: CTGATAGAAGAGCTTAATTATGAAGGCTCAAGAGCTGATGCTGATGGTG AATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCAT
genomic: CTGATAGAAGAGCTTAATTATGAAGGCTCAAGAGCTGATGCTGATGGTGgtatgttaat ... ttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCAT
caacttggagtccattacaaggtgaagtgatttttaataccttgtttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCATTCTTACAGCCTTTACTAAAAGCCTGCAAG
ttttaat putative branch site (score: 3)
ccttgttt CT-rich tract
aagtgatttttaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgttaattttatactcaatccaattttccttttttgtaaaatcttcacattgccatcaccacgtgtcttggactctggggatcctgtttatgtacattgatatgttccttcaattctatttgcaacttggagtccattacaaggtgaagtgatttttaataccttgtttggtagcagAATCGAATAGAACTTCGCTTGGAAATGCAATTACGCTTTTCAGATCATCATTCTTACAGCCTTTACTAAAAGCCTGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA