1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' |
...ttttgttatgtgaggcaaaacagatattttcttcccagtttttgtagttttttattttcaaggtaaatacatggcatctgataatttgttctgatttaagCAGCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCCGGAGAAGAGGA
species | Glycine max |
transcript | GLYMA02G44780.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTAGCACTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAAT ---CCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCCGGAGAAGAGEST: gi|192327357|gb|FK019574.1|FK019574
genomic: GTAGCACTAGTTTCAGTTCTAAGCGGTCGACATTCTGGGGAAGGAGCAATgtgagttgtt ... ctgatttaagCAGCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCCGGAGAAGAG
EST: GCGGTCGACATTCTGGGGAAGGAGCAAT CAGCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCCGGAGAAGAG
genomic: GCGGTCGACATTCTGGGGAAGGAGCAATgtgagttgtt ... ctgatttaagCAGCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCCGGAGAAGAG
agttttttattttcaaggtaaatacatggcatctgataatttgttctgatttaagCAGCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCCGGAGAAGAGGA
ttctgat putative branch site (score: 3)
tttgttct CT-rich tract
tttattttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttgttatgtgaggcaaaacagatattttcttcccagtttttgtagttttttattttcaaggtaaatacatggcatctgataatttgttctgatttaagCAGCCAAGGAAGACACCGTCAGTGGAATCAGTTGATTCTTCCGGAGAAGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- -tgttatg
- - - - - - - -caaaaca
- - - - - - - - - - - - - - - cttccca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catggca