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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgagagaaacctctgcagtttatattatataatttttttagttgaacctgaaccatttctttgtagctccccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 3'ss of exon 14
gtgtgagagaaacctctgcagtttatattatataatttttttagttgaacctgaaccatttctttgtagctccccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                           | || ||  ||  |||    |   ||  | |        ||     | || |||| ||  |  |||  || | | ||  |||  |    |   | ||||  | |   | ||  ||  ||||| ||||| || |||||  | |||||||| ||||||||||| ||  | |||||||||||||| || |||||||||||||| ||||||
--------------------------gtaatgta--ttggttaagctattttgggctagggtgaaatactctgctttgttctgtgggttgttg--atttttatttgcaaaattaatt---atttactgtatatctctt--ttaccagGGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 14
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 3'ss of exon 14
gtgtgagagaaacctctgcagtttatattatataatttttttagttgaacctgaaccatttctttgtagctccccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                 | | ||||| |  |  |  | ||||     |   ||||  |||    |          || |||| ||  |  |||  || | | ||  |||  | |  |   | ||||  | |   | ||  ||  ||||| ||||| || |||||  | |||||||| ||||||||||| ||  | |||||||||||||| || |||||||||||||| ||||||
-----------------gtaatttat-tggttaagctattttgtgctagggtgaaatattctgct----------ttgttctgtgggttgttg--atttttatttgcaaaatttatt---atttactgtatatctctt--ttaccagGGAGCTGTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 14
lower sequence: GRMZM2G057576_T02 (Zea mays), 3'ss of exon 12
gtgtgagagaaacctctgcagtttatattatataatttttttagttgaacctgaaccatttctttgtagc-tccccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                            ||  |  || |||||    ||| ||  |  ||  | ||  |  | |  || ||   |   |  || || |||||      |||   ||||  || |  | ||||  || ||||    ||||| ||||| || |||||||| |||||||| ||||||||||||||| | ||||| || |||||||| || ||||||||||| ||||||
---------------------------gtaattggttattttaagcaaacttgggc--ttaatgtgaggtattcatttgtttggtacatgtttcttttatct--cagaaatccttgctt-cattgtcaatttgtatcttgac---cagGGAGCTGTCAACTTTGCATTGATGATGTCACAAATGGAGGGAGGTTGTCCAGTAGACTACAACACTATCACTGATCTCTTCCTTCAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 3'ss of exon 14
gtgtgagagaaacctctgcagtttatattatataatttttttagttgaacctgaaccatttctttgtagctccccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgat-----ttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                                 ||||   |  || ||| |    |  || |   | || | |  |   | |||  | | |  | | | |||  | ||| | | ||  ||||  |     |||||||| || || |||||||| ||||||||||| |||||||| |||||| | |||||||| |||||||| || |||||||| || ||||||
------------------------------------------------gcctg---ctgttgtttatcaagcaactaagcttttgcc-ctgtaaaagatcaatagtcttttttttctgctaattatcttcttttttttcctgctaattgcagGGAGCAGTAAATTTTGCTTTAATGATGTCCCAAATGGAAGGAGGTTGTCCAGTTGACTACAACACTATCACTGATCTTTTCCTTCAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 14
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 3'ss of exon 14
---------------------------------------gtgtgagagaaacctctgcagtttatattatataattttttta---gttgaacctgaaccatttctttg--tagctcc-ccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                        | ||| || |   |    | | ||| |    |||    |  |   |||     | ||| |  |  |||  ||  |   ||| ||  | | |    |    |    | ||  ||  || |    |    ||   |||| ||||| |||||||||| || || ||||||||||||||||||||||||||||| ||||||   |||||||| |||||||| || |||||||| |||||||||
gttagtgtggtgcactcttgatacttgcaacatactaaactatgaaaggactttactgaatatatgtggcgtaagcactggaagagttatgaatcaactaacttgttgaataatttgacctgatgttatatagaatgaagaatctttttcccaccgtattaatatcaatagtcttttaatttttatttgcagGGAGCAGTAAATTTTGCATTAATGATGTCTCAAATGGAAGGAGGTTCTCCAGTTGACTACAACACCATCACTGATCTTTTTCTTCAG

upper sequence: GLYMA02G42560.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 3'ss of exon 14
gtgtgagagaaacctctgcagtttatattatataatttttttagttgaacctgaaccatttctttgta-------gctccccttattctctgtctccttgttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                            |||  ||   ||||  | |    || |   |||| || ||       | |||    |   || |  |   | | | ||  | | | | | ||  ||||  |    |||||   |||||  |||||||| ||||| ||||||||  |||||||||||||||||||||||||| | ||  ||||||  || || |||||||||||||||||||||
---------------------------gtatgcaagcctttttctagtgtttgcagattttccttttatgaaattgttccagaaaggatcagcttaaatttcaaattggataaaattttc--ctgagtggaggcatttat-ttttgggttgcagGGAGCTGTAAATTTTGCGCTAATGATGTCTCAAATGGAGGGAGGTTGTCCCATTGATTTTAATACGATAACTGATCTCTTTCTTCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatatctgttgacaatgtctgctgacagttaccattttcattttgatttgcagGGCGCTGTTAATTTTGCATTAATGATGTCTCAAATGGAGGGAGGTAGCCCAGTTGATTACAACACAATAACTGATCTCTTTCTTCAG
                                    ttttcatttt  CT-rich tract
                                   attttcattttgattt  TA-rich tract