1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...ttctgccaactatgtatagactatagaatatagatacaaatgactttgaaccattgtgtttttgctaagccatggtgttctaatagtgcttattcttcagAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAGTTGCACCAGCAGAGCTTGCAATCTTCATAGACGGCAAGCAAGGGTCTCT
species | Glycine max |
transcript | GLYMA02G39040.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: TGTGCGGGCAAATNNTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAG AAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAGEST: gi|19346991|gb|BM891871.1|BM891871
genomic: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAGgtaactgtac ... tattcttcagAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAG
EST: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAG AAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAGEST: gi|14259324|gb|BG882232.1|BG882232
genomic: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAGgtaactgtac ... tattcttcagAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAG
EST: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAG AAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAGEST: gi|33389206|gb|CA852413.1|CA852413
genomic: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAGgtaactgtac ... tattcttcagAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAG
EST: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAG AAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAGEST: gi|15815297|gb|BI787572.1|BI787572
genomic: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAGgtaactgtac ... tattcttcagAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAG
EST: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTACAAG AAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAG
genomic: TGTGCGGGCAAATCCTACTGTTTTGGAGGGTCTTGGTGCTCATTTAGAAGgtaactgtac ... tattcttcagAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAG
ttgaaccattgtgtttttgctaagccatggtgttctaatagtgcttattcttcagAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAGTTGCACCAGCAGAGCTTGCAATCTTCATAGACGGCAAGCAAGGGTCTCT
ttctaat putative branch site (score: 2)
cttattcttc putative PPT
ttctaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctgccaactatgtatagactatagaatatagatacaaatgactttgaaccattgtgtttttgctaagccatggtgttctaatagtgcttattcttcagAAAAAGAGAAAGTAGAGGGTGAAGAGCTACAGAAGTGGTTAAGATTGGTAGTTGCACCAGCAGAGCTTGCAATCTTCATAGACGGCAAGCAAGGGTCTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - -ccaacta
- - - - - - - - - - - - - - - - gatacaaa
- - - - - - - - - - - - - - - - - - - - -gactttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatggt