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...cctgctcccccccctcccttccccattttcaaagataaaagacagagaaacagagtaacatgcagtattttacttttactaatgggtagacttttttcagAGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTATCCAAAACTGATCCATGATGCAATGCCTCAATATCAGTTAGCTGAAATCC
species | Glycine max |
transcript | GLYMA02G35240.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: AGCTTGCTTGCTTGTTGCCATCATGGATTTCAAAGGCTTCAGCTCATCAG AGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTATEST: gi|209729559|gb|BW655148.1|BW655148
genomic: AGCTTGCTTGCTTGTTGCCATCATGGATTTCAAAGGCTTCAGCTCATCAGgtattgaagt ... cttttttcagAGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTAT
EST: AGCTTGCTTGCTTGTTGCCATCATGGATTTCAAAGGCTTCAGCTCATCAG AGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTATEST: gi|17023496|gb|BM094530.1|BM094530
genomic: AGCTTGCTTGCTTGTTGCCATCATGGATTTCAAAGGCTTCAGCTCATCAGgtattgaagt ... cttttttcagAGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTAT
EST: AGCTTGCTTGCTTGTTGCCATCATGGATTTCAAAGGCTTCAGCTCATCAG AGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTAT
genomic: AGCTTGCTTGCTTGTTGCCATCATGGATTTCAAAGGCTTCAGCTCATCAGgtattgaagt ... cttttttcagAGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTAT
agaaacagagtaacatgcagtattttacttttactaatgggtagacttttttcagAGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTATCCAAAACTGATCCATGATGCAATGCCTCAATATCAGTTAGCTGAAATCC
tactaat putative branch site (score: 1)
cttttttc putative PPT
tattttacttttacta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cctgctcccccccctcccttccccattttcaaagataaaagacagagaaacagagtaacatgcagtattttacttttactaatgggtagacttttttcagAGACGTGGTCGTGCTGGTCGAGTGCAACCTGGAGTTTGCTATAGGTTGTATCCAAAACTGATCCATGATGCAATGCCTCAATATCAGTTAGCTGAAATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - ctccccc
- - - - - - - - -cttcccc
- - - - - - - - - - - - - - - -aagataaa
- - - - - - - - - - - - - - - - - - - - - - gagaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctaatgg