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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtagcagttcttatcatgttacttcttattatagaatattgttatgcaattgcttacttttttactgatatactgaccatttctgatatttgtgttcttttcgattctggatcctccagGAAAGTTCAAT

Basic information

species Glycine max
transcript GLYMA02G32100.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192317832|gb|FK010194.1|FK010194
EST:     TAACGAGTTTGTCAGAGATCCACATTTGTTCACTATATCATTAAATAAAG                         GAAAGTTCAAT
genomic: TAACGAGTTTGTCAGAGATCCACATTTGTTCACTATATCATTTAATAAAGgtagcagttc ... gatcctccagGAAAGTTCAAT
EST: gi|192317861|gb|FK010195.1|FK010195
EST:     CACTATATCATTAAATAAAG                         GAAAGTTCAAT
genomic: CACTATATCATTTAATAAAGgtagcagttc ... gatcctccagGAAAGTTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgatatactgaccatttctgatatttgtgttcttttcgattctggatcctccagGAAAGTTCAAT
                                               tcctcc  CT-rich tract
                   tgatattt  TA-rich tract