Sequence
atgc intronic sequence ATGC exonic sequencegttgagtctatgttttcatgttataatcatttgttccttttcataatatgctattacatgggtaacacactctggtttaaatttattggaaattacaattaaataaaaaagcgagacttacaagtaaatgtactttagattgtaggttctaattcattttgtacttctattctcatagGCATGACTTAGAAGTGAATGGAGGAAAAGGTCTCATTGTGGATCCAAGAACAAAATATGTTTATCACCGACCATGAGCATGCCACCTGCAGTTCTATCAT
Basic information
species | Glycine max |
transcript | GLYMA02G12670.1 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA02G12670.1 (Glycine max), 3'ss of exon 14
lower sequence: AT1G69340.1 (Arabidopsis thaliana), 3'ss of exon 14
gttgagtctatgttttcatgttataatcatttgttccttttcataatatgctattacatgggtaacacactctggtttaaatttattggaaattacaattaaataaaaaagcgagacttacaagtaaatgtactttagatt-gtaggttctaattcattttgtacttctattctcatagGCATGACTTAGAAGTGAATGGAGGAAAAGGTCTCATTGTGGATCCAAGAACAAAATATGTTTATCACCGACCATGAGC--ATGCCACCTGCAGTTCTATCAT
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----------------------------------------------------------------------------------------gtaagttcactctactcctcacactctagtaac--gttattcagttctcgatttgttttacttactagaccttgtg--tgaaaaattgcagGCATGATCTTGAAGTTAACGGAGGAAAAGGTCTAATCGTTGACCCAAGAACAAAATACGTTTATCAACGGCCATGAACCAAAATCAAAGACCGTTACTTT--
upper sequence: GLYMA02G12670.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv01s0011g00870.t01 (Vitis vinifera), 3'ss of exon 13
gttgagtctatgttttcatgttataatcatttgttccttttcataatatgctattacatgggtaacacactctggtttaaatttattggaaattacaattaaataaaaaagcgagacttacaagtaaatgtactttagattgtaggttctaattcattttgtacttctattctcatagGCATGACTTAGAAGTGAATGGAGGAAAAGGTCTCATTGTGGATCCAAGAACAAAATATGTTTATCACCGACCATGAGCATGCCACCTGCAGTTCTATCAT--
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--------------------------------------------------------------------ttgctgatttgaggttgtgagagaggtctcagcttcaaacccattaaagctctggggaaa--------aaatcccgggttctaat--gattaaatcatatgattatgcagGCATGATTTAGAAGTGAATGGAGGGAAGGGCCTCATGGTGGATCCCAGAACAAAATATGTATATCATCGGCCATGA--AAGGCAGCAAAAAGGGGATTGAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaaatgtactttagattgtaggttctaattcattttgtacttctattctcatagGCATGACTTAGAAGTGAATGGAGGAAAAGGTCTCATTGTGGATCCAAGAACAAAATATGTTTATCACCGACCATGAGCATGCCACCTGCAGTTCTATCAT
ttctaat putative branch site (score: 2)
cttctattctc putative PPT
ttctaattcatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgagtctatgttttcatgttataatcatttgttccttttcataatatgctattacatgggtaacacactctggtttaaatttattggaaattacaattaaataaaaaagcgagacttacaagtaaatgtactttagattgtaggttctaattcattttgtacttctattctcatagGCATGACTTAGAAGTGAATGGAGGAAAAGGTCTCATTGTGGATCCAAGAACAAAATATGTTTATCACCGACCATGAGCATGCCACCTGCAGTTCTATCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG