Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgctttcttggttttagtaatcctcatttttattgaatactctgttatctataatataagattataagaccattttttcccttggttttggttatgtagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATTGAACAATATGGCA

Basic information

species Glycine max
transcript GLYMA02G07830.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G07830.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv08s0007g07570.t01 (Vitis vinifera), 3'ss of exon 13
gtatgc---tttcttggttttagtaatcctcatttttattgaatactctgttatctataatataagattataagaccattttttcccttggttttggttatgtagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATTGAACAATATGGCA
|||||    | ||||| |||  ||  |        ||    | |  ||| |   |  | |||      |||||    || |||| |||  ||||   || |  |||  |||||| |  | || ||||| || | ||||||||||||||| || ||||| ||||||||||| || |||||  |  | ||| ||||    | |||||
gtatgacagtatcttgatttatgtggta-------ttgcaaagttttctatagccatttatacgg---tataaatatatgtttttcct--gtttc--ttctacagAGGCACCCTGCTGTGACCCCTCCAAGCTATCCTCAAGTACAGGCACCCATTGTCAATAATCCTGCCTTCTGGGAACGGCTGGGTCTTGATACTTTTGGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208072518|gb|GD869806.1|GD869806
EST:     TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTACAAAGTAACAAGGCTCC
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgtagAAACACCCTACGATAACACCTCCTAGTTTTCCT-CAA-GTA-CA-GGCTCC
EST: gi|193418229|gb|FK383475.1|FK383475
EST:     TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgtagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATT
EST: gi|208230983|gb|GE033102.1|GE033102
EST:     TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTATGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgtagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATT
EST: gi|193602394|gb|FK556291.1|FK556291
EST:     TCAAACTTCCGCAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgtagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATT
EST: gi|254336764|gb|GR842943.1|GR842943
EST:     TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCT                         AAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATT
genomic: TCAAACTTCCACAACCTAAGGACTCAGAACGTCCTAGGACCTATACTCCTgtatgctttc ... ggttatgtagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatctataatataagattataagaccattttttcccttggttttggttatgtagAAACACCCTACGATAACACCTCCTAGTTTTCCTCAAGTACAGGCTCCTATTGTTAATAATCCTGCTTTTTGGGAGAGAGTAGGTATTGAACAATATGGCA
     tataatataagattat  TA-rich tract