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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtaatagtaatggtaatattttaattcaatttcagatgattatctatgcttttaactagtttatttgattgataccagGGGGTTGTATCTGAGGATTCACATCTATTCAGCATGTTGGGAATAGTTTCTGTTGTTGGACTTGTG

Basic information

species Glycine max
transcript GLYMA02G06280.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192311160|gb|FK004793.1|FK004793
EST:     CTGTAATGACTGTTAGCCTTCTCATTGTTTCAATAGCATTTTATCTGGAG                         GGGGTTGTATCTGAGGATTCACATCTATTCAGCATGTTGGGAATAGTTTCT
genomic: CTGTAATGACTGTTAGCCTTCTCATTGTTTCAATAGCATTTTATCTGGAGgttggtaata ... ttgataccagGGGGTTGTATCTGAGGATTCACATCTATTCAGCATGTTGGGAATAGTTTCT
EST: gi|192311159|gb|FK004792.1|FK004792
EST:     CTGTAATGACTGTTAGCCTTCTCATTGTTTCAATAGCATTTTATCTGGAG                         GGGGTTGTATCTGAGGATTCACATCTATTCAGCATGTTGGGAATAGTTTCT
genomic: CTGTAATGACTGTTAGCCTTCTCATTGTTTCAATAGCATTTTATCTGGAGgttggtaata ... ttgataccagGGGGTTGTATCTGAGGATTCACATCTATTCAGCATGTTGGGAATAGTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attcaatttcagatgattatctatgcttttaactagtttatttgattgataccagGGGGTTGTATCTGAGGATTCACATCTATTCAGCATGTTGGGAATAGTTTCTGTTGTTGGACTTGTG
                          ttttaactagtttatt  TA-rich tract