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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgtttcttcatcctctttaataatgtataactatttttccaagttgcaaccttattttcaataaaccgcaatgatatcattcataaattatgaatatttatgtttagttgaatgagtgtttgtttttgtattgcagGTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACACAAAAGATCTTAGACCAACTTCAATTGGATACATACTATCCTGTATATA

Basic information

species Glycine max
transcript GLYMA02G05680.1
intron # 14
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|214004656|gb|DB988984.1|DB988984
EST:     CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT                         GTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACA
genomic: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtt ... tgtattgcagGTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACA
EST: gi|24205572|gb|BU964825.1|BU964825
EST:     CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT                         GTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACA
genomic: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtt ... tgtattgcagGTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACA
EST: gi|31462052|gb|CD404080.1|CD404080
EST:     CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT                         GTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACA
genomic: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtt ... tgtattgcagGTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACA
EST: gi|151404374|gb|EV274184.1|EV274184
EST:     CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAAT                         GTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACA
genomic: CGAAAGGATTAGCTGGAATCCAACCTGTCGATATTCCTGGGATCCAAAATgtaagatgtt ... tgtattgcagGTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cataaattatgaatatttatgtttagttgaatgagtgtttgtttttgtattgcagGTCGATGTGACAGAACACATCGAAGGCCATTCGTCTTATCTGTGGGCTACACAAAAGATCTTAGACCAACTTCAATTGGATACATACTATCCTGTATATA
                                     tttgttttt  CT-rich tract
     attatgaatatttatg  TA-rich tract