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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgaatgtgttctttttttatttttgattcataactcatggaaattatatcatctctaatgccatagttgtccgattcacagGATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGC

Basic information

species Glycine max
transcript GLYMA02G03410.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G03410.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv01s0026g00610.t01 (Vitis vinifera), 3'ss of exon 15
gtatgaa-tgtgttctttttttatttttgattcataactcatggaaattatatcatctctaatgccatagttgtccgattcacagGATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGC
|||||   | || | || ||  | || |  |||| ||  || | |    ||  || |   | |  ||  ||  |    |  ||||||||| || || ||||| |||||||||||||||||| ||||||| ||||| || ||||| || |||||| |||  || |||||||| ||||||||||| |
gtatgggctttggttttcttgaaattctttttcacaagaca-gtagcgcattgcagcagca-tctcactgtaattttgtgaacagGATGAAGGGGCATTTGCCATTGCTCAAGCACTCAAGGCTAATGAAGATGTGGCAGTCACGTCTCTAAACCTTGCGAGCAACTTCCTCACAAAATTTGGAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51342584|gb|CO983555.1|CO983555
EST:     TGGTTAATGAAGCTTTAACCTCTCTAGACTTAGGATTTAATGAAATAAGG                         GATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTA
genomic: TGGTTAATGAAGCTTTAACCTCTCTAGACTTAGGATTTAATGAAATAAGGgtatgaatgt ... cgattcacagGATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTA
EST: gi|12772301|gb|BG237228.1|BG237228
EST:     TGGTTAATGAAGCTTTAACCTCTCTAGACTTAGGATTTAATGAAATAAGG                         GATGATGGAAGCTTTTGCTATTGACTCAAGCACTCAAGTCTAATGATGATG
genomic: TGGTTAATGAAGCTTTAACCTCTCTAGACTTAGGATTTAATGAAATAAGGgtatgaatgt ... cgattcacagGATGATGG-AGCTTTTGCTATTG-CTCAAGCACTCAAGTCTAATGATGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcataactcatggaaattatatcatctctaatgccatagttgtccgattcacagGATGATGGAGCTTTTGCTATTGCTCAAGCACTCAAGTCTAATGATGATGTAGCTGTCACATCCCTAAACATTGGCAGTAACTTCCTAACAAAATTTGGGC
              aaattatatcatct  TA-rich tract