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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttattgacttatttgaaacacatctcaaatgataccaaattaatgttagattcagatccctatgctaatttactttgtgttccacttttatctcaccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA

Basic information

species Glycine max
transcript GLYMA02G01930.1
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G01930.1 (Glycine max), 3'ss of exon 14
lower sequence: Vv07s0005g00880.t01 (Vitis vinifera), 3'ss of exon 15
gtgagttattg--acttatttgaaacacatctcaaatgataccaaattaatgttagattcagatccctatgctaat--ttactttgtgttccacttttatc-tcaccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
|| ||||  ||  | | ||| ||  || |  |  | |  || || |||    | | | | | |||    || | ||  || |||  | ||  ||  ||  | |  ||||||||||||| |||||||||||||| || ||||| 
gtaagttgatgcaattcattagagccaaactt--attcttatcatattt---tgaaacttaaatctgagtgatcatattttcttgctatttgacaattgacattgccttgcagTCACTAATGCTTGTCACATCTTTGAACCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51344356|gb|CO985089.1|CO985089
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|31561807|gb|CD487645.1|CD487645
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAA-TTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|26047345|gb|CA784166.1|CA784166
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|31458946|gb|CD400974.1|CD400974
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|192307576|gb|FG999615.1|FG999615
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|51336381|gb|CO980247.1|CO980247
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|13252662|gb|BG363565.1|BG363565
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|10237782|gb|BE806670.1|BE806670
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|151394627|gb|EV264498.1|EV264498
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCC
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCC
EST: gi|51343889|gb|CO984622.1|CO984622
EST:     TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: TGAGAGGTATTCAAGCTAATAGGGAAAGAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
EST: gi|7640202|gb|AW734508.1|AW734508
EST:     GAATTTCAAAATTACTGCATGAG                         TCACTTATGCTTGTCACATCCTTAAACCCA
genomic: GAATTTCAAAATTACTGCATGAGgtgagttatt ... caccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattcagatccctatgctaatttactttgtgttccacttttatctcaccttgcagTCACTTATGCTTGTCACATCCTTAAACCCA
                               ttccacttttatctc  CT-rich tract
                 taatttacttt  TA-rich tract